Hb_002518_100

Information

Type -
Description -
Location Contig2518: 114130-117860
Sequence    

Annotation

kegg
ID crb:CARUB_v10003829mg
description hypothetical protein
nr
ID -
description -
swissprot
ID Q8LKS5
description Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_100 0.0 - - -
2 Hb_044653_070 0.1474168122 - - hypothetical protein CICLE_v10018540mg [Citrus clementina]
3 Hb_002085_050 0.1661851193 - - PREDICTED: beta-galactosidase 8 [Jatropha curcas]
4 Hb_001365_010 0.1784913896 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
5 Hb_035834_010 0.1787863954 - - zinc finger protein, putative [Ricinus communis]
6 Hb_177343_010 0.180538751 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
7 Hb_004710_020 0.1807185552 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
8 Hb_033683_010 0.1868640951 - - myo inositol monophosphatase, putative [Ricinus communis]
9 Hb_130589_010 0.188553185 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_000951_120 0.1899519055 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
11 Hb_000347_190 0.1899606501 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
12 Hb_000328_050 0.1948581985 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
13 Hb_001348_090 0.1952125722 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
14 Hb_000496_130 0.1963847339 - - PREDICTED: fructokinase-1 [Jatropha curcas]
15 Hb_004242_170 0.1964167126 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
16 Hb_032631_070 0.1974124544 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
17 Hb_001405_080 0.1975545117 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
18 Hb_003777_250 0.1983419198 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
19 Hb_000441_050 0.1984004945 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
20 Hb_002305_010 0.1985775576 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002518_100 Hb_002518_100 Hb_044653_070 Hb_044653_070 Hb_002518_100--Hb_044653_070 Hb_002085_050 Hb_002085_050 Hb_002518_100--Hb_002085_050 Hb_001365_010 Hb_001365_010 Hb_002518_100--Hb_001365_010 Hb_035834_010 Hb_035834_010 Hb_002518_100--Hb_035834_010 Hb_177343_010 Hb_177343_010 Hb_002518_100--Hb_177343_010 Hb_004710_020 Hb_004710_020 Hb_002518_100--Hb_004710_020 Hb_130589_010 Hb_130589_010 Hb_044653_070--Hb_130589_010 Hb_024677_010 Hb_024677_010 Hb_044653_070--Hb_024677_010 Hb_012799_190 Hb_012799_190 Hb_044653_070--Hb_012799_190 Hb_001348_090 Hb_001348_090 Hb_044653_070--Hb_001348_090 Hb_000951_120 Hb_000951_120 Hb_044653_070--Hb_000951_120 Hb_097495_010 Hb_097495_010 Hb_002085_050--Hb_097495_010 Hb_015531_020 Hb_015531_020 Hb_002085_050--Hb_015531_020 Hb_009687_020 Hb_009687_020 Hb_002085_050--Hb_009687_020 Hb_001369_100 Hb_001369_100 Hb_002085_050--Hb_001369_100 Hb_002759_120 Hb_002759_120 Hb_002085_050--Hb_002759_120 Hb_000049_180 Hb_000049_180 Hb_002085_050--Hb_000049_180 Hb_001365_020 Hb_001365_020 Hb_001365_010--Hb_001365_020 Hb_000329_080 Hb_000329_080 Hb_001365_010--Hb_000329_080 Hb_000163_110 Hb_000163_110 Hb_001365_010--Hb_000163_110 Hb_000441_050 Hb_000441_050 Hb_001365_010--Hb_000441_050 Hb_003783_050 Hb_003783_050 Hb_001365_010--Hb_003783_050 Hb_001365_010--Hb_035834_010 Hb_036388_010 Hb_036388_010 Hb_035834_010--Hb_036388_010 Hb_000445_370 Hb_000445_370 Hb_035834_010--Hb_000445_370 Hb_035834_010--Hb_003783_050 Hb_035834_010--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_035834_010--Hb_004242_170 Hb_000120_740 Hb_000120_740 Hb_035834_010--Hb_000120_740 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_163145_030 Hb_163145_030 Hb_177343_010--Hb_163145_030 Hb_059741_010 Hb_059741_010 Hb_177343_010--Hb_059741_010 Hb_002164_020 Hb_002164_020 Hb_177343_010--Hb_002164_020 Hb_011310_050 Hb_011310_050 Hb_177343_010--Hb_011310_050 Hb_010175_030 Hb_010175_030 Hb_177343_010--Hb_010175_030 Hb_000496_130 Hb_000496_130 Hb_004710_020--Hb_000496_130 Hb_000085_070 Hb_000085_070 Hb_004710_020--Hb_000085_070 Hb_000454_100 Hb_000454_100 Hb_004710_020--Hb_000454_100 Hb_002828_060 Hb_002828_060 Hb_004710_020--Hb_002828_060 Hb_006006_060 Hb_006006_060 Hb_004710_020--Hb_006006_060 Hb_004710_020--Hb_001348_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0550745 0.111045 0.422721 0.643391 0.108767 0.276668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.199064 0.0904109 0.382104 1.10406

CAGE analysis