Hb_002518_110

Information

Type -
Description -
Location Contig2518: 118748-119654
Sequence    

Annotation

kegg
ID egr:104424717
description 1-aminocyclopropane-1-carboxylate oxidase-like
nr
ID ABK58140.1
description 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
swissprot
ID P05116
description 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2
trembl
ID A0SVL8
description 1-amino-cyclopropane-1-carboxylic acid oxidase OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0016706
description 1-aminocyclopropane-1-carboxylate oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_110 0.0 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
2 Hb_011310_090 0.1856502182 - - PREDICTED: putative ATPase N2B isoform X3 [Vitis vinifera]
3 Hb_002636_040 0.2042886491 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
4 Hb_017098_010 0.2233117761 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_008123_010 0.2239542755 - - -
6 Hb_090530_010 0.2240493513 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_004244_010 0.2240637576 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
8 Hb_008092_080 0.228219499 - - elongation factor ts, putative [Ricinus communis]
9 Hb_143629_060 0.2298973007 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
10 Hb_000599_230 0.2368236707 - - -
11 Hb_005288_110 0.2373281166 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
12 Hb_004987_070 0.239532741 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
13 Hb_002085_100 0.2397051494 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
14 Hb_138781_010 0.2424926166 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
15 Hb_003058_020 0.2439379887 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
16 Hb_003632_030 0.2476933869 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
17 Hb_032920_100 0.2490187852 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
18 Hb_000237_210 0.2493212358 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011616_020 0.2508571894 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
20 Hb_002740_190 0.2533923911 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002518_110 Hb_002518_110 Hb_011310_090 Hb_011310_090 Hb_002518_110--Hb_011310_090 Hb_002636_040 Hb_002636_040 Hb_002518_110--Hb_002636_040 Hb_017098_010 Hb_017098_010 Hb_002518_110--Hb_017098_010 Hb_008123_010 Hb_008123_010 Hb_002518_110--Hb_008123_010 Hb_090530_010 Hb_090530_010 Hb_002518_110--Hb_090530_010 Hb_004244_010 Hb_004244_010 Hb_002518_110--Hb_004244_010 Hb_001141_300 Hb_001141_300 Hb_011310_090--Hb_001141_300 Hb_011310_090--Hb_017098_010 Hb_001631_100 Hb_001631_100 Hb_011310_090--Hb_001631_100 Hb_142328_010 Hb_142328_010 Hb_011310_090--Hb_142328_010 Hb_011310_090--Hb_002636_040 Hb_003632_030 Hb_003632_030 Hb_002636_040--Hb_003632_030 Hb_008092_060 Hb_008092_060 Hb_002636_040--Hb_008092_060 Hb_005288_110 Hb_005288_110 Hb_002636_040--Hb_005288_110 Hb_001396_240 Hb_001396_240 Hb_002636_040--Hb_001396_240 Hb_004466_050 Hb_004466_050 Hb_002636_040--Hb_004466_050 Hb_001408_030 Hb_001408_030 Hb_002636_040--Hb_001408_030 Hb_016760_010 Hb_016760_010 Hb_017098_010--Hb_016760_010 Hb_003777_250 Hb_003777_250 Hb_017098_010--Hb_003777_250 Hb_017098_010--Hb_003632_030 Hb_011616_020 Hb_011616_020 Hb_017098_010--Hb_011616_020 Hb_000529_140 Hb_000529_140 Hb_017098_010--Hb_000529_140 Hb_001080_150 Hb_001080_150 Hb_017098_010--Hb_001080_150 Hb_008123_010--Hb_090530_010 Hb_008123_010--Hb_011616_020 Hb_031658_040 Hb_031658_040 Hb_008123_010--Hb_031658_040 Hb_002276_070 Hb_002276_070 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060 Hb_008092_080 Hb_008092_080 Hb_090530_010--Hb_008092_080 Hb_002740_190 Hb_002740_190 Hb_090530_010--Hb_002740_190 Hb_024714_080 Hb_024714_080 Hb_090530_010--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_090530_010--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_090530_010--Hb_003077_130 Hb_002154_070 Hb_002154_070 Hb_004244_010--Hb_002154_070 Hb_003805_060 Hb_003805_060 Hb_004244_010--Hb_003805_060 Hb_000424_150 Hb_000424_150 Hb_004244_010--Hb_000424_150 Hb_028912_040 Hb_028912_040 Hb_004244_010--Hb_028912_040 Hb_032920_100 Hb_032920_100 Hb_004244_010--Hb_032920_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03075 0.45071 1.12101 2.58116 1.63737 5.91638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.380236 0.512442 1.77541 8.84776

CAGE analysis