Hb_002518_140

Information

Type -
Description -
Location Contig2518: 158069-159451
Sequence    

Annotation

kegg
ID rcu:RCOM_0866790
description hypothetical protein
nr
ID KDP27790.1
description hypothetical protein JCGZ_18870 [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067K6A9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18870 PE=4 SV=1
Gene Ontology
ID GO:0016787
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26283: 157960-158445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_140 0.0 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
2 Hb_001277_330 0.0667953017 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
3 Hb_010795_010 0.0668448071 - - protein with unknown function [Ricinus communis]
4 Hb_013405_030 0.0760342244 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010172_050 0.0779295867 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
6 Hb_171900_080 0.0780440002 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_126643_020 0.0794449354 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
8 Hb_002105_040 0.0811009414 - - -
9 Hb_006915_050 0.0819865303 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
10 Hb_000203_160 0.0821702671 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
11 Hb_008695_210 0.082840883 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
12 Hb_002739_100 0.0836366802 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
13 Hb_000754_040 0.0851726862 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
14 Hb_002027_250 0.0856904523 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_178968_110 0.0864577404 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
16 Hb_000111_360 0.0867855984 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000175_460 0.0885236347 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_019654_100 0.0891455151 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
19 Hb_000928_210 0.0897552567 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
20 Hb_002016_110 0.0897696318 - - transducin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002518_140 Hb_002518_140 Hb_001277_330 Hb_001277_330 Hb_002518_140--Hb_001277_330 Hb_010795_010 Hb_010795_010 Hb_002518_140--Hb_010795_010 Hb_013405_030 Hb_013405_030 Hb_002518_140--Hb_013405_030 Hb_010172_050 Hb_010172_050 Hb_002518_140--Hb_010172_050 Hb_171900_080 Hb_171900_080 Hb_002518_140--Hb_171900_080 Hb_126643_020 Hb_126643_020 Hb_002518_140--Hb_126643_020 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_000030_010 Hb_000030_010 Hb_010795_010--Hb_000030_010 Hb_010795_010--Hb_171900_080 Hb_000123_120 Hb_000123_120 Hb_010795_010--Hb_000123_120 Hb_000392_300 Hb_000392_300 Hb_010795_010--Hb_000392_300 Hb_019654_100 Hb_019654_100 Hb_010795_010--Hb_019654_100 Hb_000574_390 Hb_000574_390 Hb_013405_030--Hb_000574_390 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_000047_030 Hb_000047_030 Hb_013405_030--Hb_000047_030 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_015198_020 Hb_015198_020 Hb_013405_030--Hb_015198_020 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140 Hb_171900_080--Hb_001277_330 Hb_171900_080--Hb_003266_130 Hb_171900_080--Hb_000123_120 Hb_171900_080--Hb_178968_110 Hb_000203_160 Hb_000203_160 Hb_126643_020--Hb_000203_160 Hb_002685_010 Hb_002685_010 Hb_126643_020--Hb_002685_010 Hb_002085_110 Hb_002085_110 Hb_126643_020--Hb_002085_110 Hb_005699_070 Hb_005699_070 Hb_126643_020--Hb_005699_070 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76175 3.80017 2.08357 2.22512 5.65627 4.58558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8327 6.39695 9.0476 2.4917 3.15087

CAGE analysis