Hb_002518_200

Information

Type -
Description -
Location Contig2518: 185926-188904
Sequence    

Annotation

kegg
ID tcc:TCM_041691
description Proliferating cell nuclear antigen
nr
ID XP_007016210.1
description Proliferating cell nuclear antigen [Theobroma cacao]
swissprot
ID O82797
description Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1
trembl
ID A0A061GZY2
description Proliferating cell nuclear antigen OS=Theobroma cacao GN=TCM_041691 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proliferating cell nuclear antigen

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26289: 187912-188305 , PASA_asmbl_26290: 185911-188756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_200 0.0 - - Proliferating cell nuclear antigen [Theobroma cacao]
2 Hb_000692_210 0.1131455324 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
3 Hb_000181_270 0.130175819 - - ATP binding protein, putative [Ricinus communis]
4 Hb_004920_050 0.1322156435 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
5 Hb_000003_740 0.1328668905 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
6 Hb_000111_390 0.1374148938 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
7 Hb_000134_030 0.1401492172 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
8 Hb_000890_020 0.1408492361 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
9 Hb_000260_610 0.1424328743 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
10 Hb_000077_440 0.1442744641 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
11 Hb_002400_050 0.1447046461 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
12 Hb_086639_050 0.1486785849 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_000529_040 0.1496915004 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
14 Hb_004837_220 0.1576933387 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
15 Hb_080147_020 0.1586760539 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
16 Hb_000959_190 0.1597768704 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
17 Hb_002249_170 0.1625895766 - - copine, putative [Ricinus communis]
18 Hb_011485_030 0.1656245056 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
19 Hb_001318_150 0.1657210815 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
20 Hb_003747_050 0.1678292901 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]

Gene co-expression network

sample Hb_002518_200 Hb_002518_200 Hb_000692_210 Hb_000692_210 Hb_002518_200--Hb_000692_210 Hb_000181_270 Hb_000181_270 Hb_002518_200--Hb_000181_270 Hb_004920_050 Hb_004920_050 Hb_002518_200--Hb_004920_050 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030 Hb_004837_220 Hb_004837_220 Hb_000692_210--Hb_004837_220 Hb_003747_050 Hb_003747_050 Hb_000692_210--Hb_003747_050 Hb_000692_210--Hb_000003_740 Hb_005000_140 Hb_005000_140 Hb_000692_210--Hb_005000_140 Hb_080147_020 Hb_080147_020 Hb_000692_210--Hb_080147_020 Hb_011485_030 Hb_011485_030 Hb_000181_270--Hb_011485_030 Hb_000181_270--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_000181_270--Hb_000288_090 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040 Hb_000890_020 Hb_000890_020 Hb_000181_270--Hb_000890_020 Hb_004920_050--Hb_011485_030 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_004920_050--Hb_000890_020 Hb_000566_130 Hb_000566_130 Hb_004920_050--Hb_000566_130 Hb_000003_740--Hb_004920_050 Hb_148346_010 Hb_148346_010 Hb_000003_740--Hb_148346_010 Hb_114943_020 Hb_114943_020 Hb_000003_740--Hb_114943_020 Hb_000015_150 Hb_000015_150 Hb_000003_740--Hb_000015_150 Hb_011671_110 Hb_011671_110 Hb_000111_390--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_000111_390--Hb_086639_050 Hb_001627_010 Hb_001627_010 Hb_000111_390--Hb_001627_010 Hb_047442_010 Hb_047442_010 Hb_000111_390--Hb_047442_010 Hb_002249_170 Hb_002249_170 Hb_000111_390--Hb_002249_170 Hb_001318_150 Hb_001318_150 Hb_000111_390--Hb_001318_150 Hb_008173_060 Hb_008173_060 Hb_000134_030--Hb_008173_060 Hb_002400_050 Hb_002400_050 Hb_000134_030--Hb_002400_050 Hb_124951_010 Hb_124951_010 Hb_000134_030--Hb_124951_010 Hb_000260_610 Hb_000260_610 Hb_000134_030--Hb_000260_610 Hb_000134_030--Hb_000890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88642 15.8945 35.8782 20.0146 2.51562 2.91334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10425 2.11834 0.988477 9.31131 2.68893

CAGE analysis