Hb_002518_210

Information

Type -
Description -
Location Contig2518: 189653-194604
Sequence    

Annotation

kegg
ID rcu:RCOM_0731070
description mitochondrial uncoupling protein, putative
nr
ID XP_012068404.1
description PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
swissprot
ID Q9ZWG1
description Mitochondrial uncoupling protein 2 OS=Arabidopsis thaliana GN=PUMP2 PE=2 SV=1
trembl
ID A0A067LPU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08536 PE=3 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial uncoupling protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26291: 192879-193316 , PASA_asmbl_26292: 189893-194567 , PASA_asmbl_26293: 190933-194435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_210 0.0 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
2 Hb_000768_210 0.0712073969 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
3 Hb_001189_070 0.0756927332 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
4 Hb_008841_020 0.0860675638 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
5 Hb_003633_030 0.089158669 - - f-actin capping protein alpha, putative [Ricinus communis]
6 Hb_000141_080 0.0905218983 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
7 Hb_001366_370 0.0906440271 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
8 Hb_000310_090 0.09080403 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
9 Hb_025098_010 0.0909240928 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_001252_130 0.0912397638 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
11 Hb_002289_080 0.0927045483 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
12 Hb_086085_020 0.0933541698 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
13 Hb_001353_010 0.0950005858 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
14 Hb_002053_140 0.0956039607 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
15 Hb_006478_020 0.0965134499 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_003929_270 0.0971551697 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
17 Hb_000081_160 0.098386676 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
18 Hb_006618_120 0.0998230342 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
19 Hb_185255_010 0.1000888701 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_024650_070 0.1003403711 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]

Gene co-expression network

sample Hb_002518_210 Hb_002518_210 Hb_000768_210 Hb_000768_210 Hb_002518_210--Hb_000768_210 Hb_001189_070 Hb_001189_070 Hb_002518_210--Hb_001189_070 Hb_008841_020 Hb_008841_020 Hb_002518_210--Hb_008841_020 Hb_003633_030 Hb_003633_030 Hb_002518_210--Hb_003633_030 Hb_000141_080 Hb_000141_080 Hb_002518_210--Hb_000141_080 Hb_001366_370 Hb_001366_370 Hb_002518_210--Hb_001366_370 Hb_000768_210--Hb_001366_370 Hb_002053_140 Hb_002053_140 Hb_000768_210--Hb_002053_140 Hb_001232_190 Hb_001232_190 Hb_000768_210--Hb_001232_190 Hb_024650_070 Hb_024650_070 Hb_000768_210--Hb_024650_070 Hb_086085_020 Hb_086085_020 Hb_000768_210--Hb_086085_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050 Hb_001828_150 Hb_001828_150 Hb_008841_020--Hb_001828_150 Hb_000599_250 Hb_000599_250 Hb_008841_020--Hb_000599_250 Hb_000200_020 Hb_000200_020 Hb_008841_020--Hb_000200_020 Hb_006478_020 Hb_006478_020 Hb_008841_020--Hb_006478_020 Hb_001489_080 Hb_001489_080 Hb_008841_020--Hb_001489_080 Hb_033594_120 Hb_033594_120 Hb_003633_030--Hb_033594_120 Hb_000599_300 Hb_000599_300 Hb_003633_030--Hb_000599_300 Hb_007017_030 Hb_007017_030 Hb_003633_030--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_003633_030--Hb_002893_080 Hb_000421_220 Hb_000421_220 Hb_003633_030--Hb_000421_220 Hb_001279_150 Hb_001279_150 Hb_003633_030--Hb_001279_150 Hb_000141_080--Hb_002053_140 Hb_030736_020 Hb_030736_020 Hb_000141_080--Hb_030736_020 Hb_000141_080--Hb_001366_370 Hb_009787_030 Hb_009787_030 Hb_000141_080--Hb_009787_030 Hb_000735_110 Hb_000735_110 Hb_000141_080--Hb_000735_110 Hb_001427_160 Hb_001427_160 Hb_000141_080--Hb_001427_160 Hb_001366_370--Hb_000200_020 Hb_001366_370--Hb_002053_140 Hb_000783_010 Hb_000783_010 Hb_001366_370--Hb_000783_010 Hb_001366_370--Hb_001427_160 Hb_001366_370--Hb_009787_030 Hb_000510_300 Hb_000510_300 Hb_001366_370--Hb_000510_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.87615 1.33839 4.29475 9.2292 3.74123 5.89334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.65601 8.36115 4.8121 5.12273 6.19174

CAGE analysis