Hb_002518_260

Information

Type -
Description -
Location Contig2518: 207571-213165
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04630g
description POPTRDRAFT_1088232; hypothetical protein
nr
ID XP_012076257.1
description PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
swissprot
ID Q5SNN4
description Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1
trembl
ID A0A067KH31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12817 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 40-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26301: 207585-212855 , PASA_asmbl_26302: 212894-213086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_260 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
2 Hb_000041_110 0.0384689677 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
3 Hb_000792_010 0.0465705143 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
4 Hb_000028_480 0.0468715243 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
5 Hb_009486_140 0.0483792895 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
6 Hb_011386_010 0.0495679602 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_000329_710 0.0525790506 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
8 Hb_007479_040 0.0586950133 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001417_030 0.0612195641 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
10 Hb_001004_060 0.0614525137 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
11 Hb_004254_090 0.0618720234 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
12 Hb_001357_020 0.0618731813 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
13 Hb_005054_110 0.0641139202 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
14 Hb_156279_020 0.0661724201 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
15 Hb_029510_050 0.0662144667 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
16 Hb_005686_090 0.0664494014 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
17 Hb_001198_100 0.0666625147 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
18 Hb_000111_290 0.0672799984 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
19 Hb_002263_020 0.0674237266 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_002110_190 0.0692944676 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]

Gene co-expression network

sample Hb_002518_260 Hb_002518_260 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_000792_010 Hb_000792_010 Hb_002518_260--Hb_000792_010 Hb_000028_480 Hb_000028_480 Hb_002518_260--Hb_000028_480 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_000329_710 Hb_000329_710 Hb_002518_260--Hb_000329_710 Hb_000041_110--Hb_009486_140 Hb_000258_160 Hb_000258_160 Hb_000041_110--Hb_000258_160 Hb_000297_010 Hb_000297_010 Hb_000041_110--Hb_000297_010 Hb_000041_110--Hb_000792_010 Hb_000041_110--Hb_000329_710 Hb_000792_010--Hb_000329_710 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_000792_010--Hb_011386_010 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_009486_140--Hb_000329_710 Hb_009486_140--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_009486_140--Hb_156279_020 Hb_005054_110 Hb_005054_110 Hb_009486_140--Hb_005054_110 Hb_011386_010--Hb_005054_110 Hb_002078_350 Hb_002078_350 Hb_011386_010--Hb_002078_350 Hb_011386_010--Hb_000329_710 Hb_011386_010--Hb_156279_020 Hb_000329_710--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3684 20.5923 13.1973 17.3097 20.4333 20.9783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4567 22.1432 25.9135 24.6019 25.5696

CAGE analysis