Hb_002518_270

Information

Type -
Description -
Location Contig2518: 214102-223434
Sequence    

Annotation

kegg
ID rcu:RCOM_0730590
description glycogen phosphorylase, putative (EC:2.4.1.1)
nr
ID XP_002520435.1
description glycogen phosphorylase, putative [Ricinus communis]
swissprot
ID P32811
description Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9S366
description Alpha-1,4 glucan phosphorylase OS=Ricinus communis GN=RCOM_0730590 PE=3 SV=1
Gene Ontology
ID GO:0005829
description alpha-glucan h isozyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26304: 214397-223077 , PASA_asmbl_26306: 224421-224584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_270 0.0 - - glycogen phosphorylase, putative [Ricinus communis]
2 Hb_006970_150 0.108064882 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
3 Hb_006501_170 0.1233667244 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
4 Hb_003337_050 0.1272142572 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
5 Hb_033045_010 0.128727666 - - copine, putative [Ricinus communis]
6 Hb_008948_080 0.1288910229 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
7 Hb_001946_060 0.1337517352 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
8 Hb_107543_010 0.1341279979 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
9 Hb_000343_260 0.1383679275 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
10 Hb_004218_160 0.1399532699 - - NBS-LRR type disease resistance protein [Medicago truncatula]
11 Hb_000819_010 0.1418674008 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
12 Hb_003106_210 0.1420119283 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
13 Hb_000265_020 0.1435500527 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
14 Hb_000280_110 0.1441761848 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_000668_160 0.1489868685 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_073119_010 0.1497289681 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_001921_010 0.1507645693 - - ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_000521_290 0.152101711 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
19 Hb_006718_040 0.1544239331 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
20 Hb_000489_020 0.1560333938 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002518_270 Hb_002518_270 Hb_006970_150 Hb_006970_150 Hb_002518_270--Hb_006970_150 Hb_006501_170 Hb_006501_170 Hb_002518_270--Hb_006501_170 Hb_003337_050 Hb_003337_050 Hb_002518_270--Hb_003337_050 Hb_033045_010 Hb_033045_010 Hb_002518_270--Hb_033045_010 Hb_008948_080 Hb_008948_080 Hb_002518_270--Hb_008948_080 Hb_001946_060 Hb_001946_060 Hb_002518_270--Hb_001946_060 Hb_006970_150--Hb_033045_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_000265_020 Hb_000265_020 Hb_006970_150--Hb_000265_020 Hb_006970_150--Hb_008948_080 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_003337_050--Hb_033045_010 Hb_009803_030 Hb_009803_030 Hb_003337_050--Hb_009803_030 Hb_003337_050--Hb_006970_150 Hb_003337_050--Hb_001946_060 Hb_003337_050--Hb_000265_020 Hb_033045_010--Hb_000265_020 Hb_063523_010 Hb_063523_010 Hb_033045_010--Hb_063523_010 Hb_000489_020 Hb_000489_020 Hb_033045_010--Hb_000489_020 Hb_031862_020 Hb_031862_020 Hb_033045_010--Hb_031862_020 Hb_000723_120 Hb_000723_120 Hb_008948_080--Hb_000723_120 Hb_008948_080--Hb_000120_070 Hb_004459_110 Hb_004459_110 Hb_008948_080--Hb_004459_110 Hb_000163_250 Hb_000163_250 Hb_001946_060--Hb_000163_250 Hb_001085_230 Hb_001085_230 Hb_001946_060--Hb_001085_230 Hb_007919_030 Hb_007919_030 Hb_001946_060--Hb_007919_030 Hb_000037_010 Hb_000037_010 Hb_001946_060--Hb_000037_010 Hb_000808_220 Hb_000808_220 Hb_001946_060--Hb_000808_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.694895 60.2867 15.6192 7.02164 0.895753 0.601178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14773 1.0173 0.291761 31.4204 12.8572

CAGE analysis