Hb_002518_300

Information

Type -
Description -
Location Contig2518: 245020-246747
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04690g
description POPTRDRAFT_833245; hypothetical protein
nr
ID XP_012068257.1
description PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
swissprot
ID Q9SS80
description UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1
trembl
ID A0A067LGS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08525 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26311: 246643-246913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_300 0.0 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
2 Hb_003243_020 0.117186454 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
3 Hb_007416_370 0.1384847461 - - conserved hypothetical protein [Ricinus communis]
4 Hb_099698_010 0.1546335002 - - -
5 Hb_008406_130 0.1772094131 - - -
6 Hb_000040_050 0.1777365019 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
7 Hb_004712_110 0.183786831 - - 30S ribosomal protein S10, putative [Ricinus communis]
8 Hb_001390_010 0.1862083297 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
9 Hb_000001_160 0.1867672592 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
10 Hb_030627_040 0.1970825839 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
11 Hb_004994_340 0.1981814486 - - -
12 Hb_000261_520 0.1991438768 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
13 Hb_000038_150 0.202917324 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
14 Hb_006882_010 0.2031425775 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
15 Hb_005928_080 0.206199476 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
16 Hb_000940_040 0.2077996403 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
17 Hb_003580_040 0.2084761012 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
18 Hb_002235_120 0.2095139351 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
19 Hb_000755_080 0.2104251367 - - hypothetical protein RCOM_1016710 [Ricinus communis]
20 Hb_004376_030 0.2144727243 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_002518_300 Hb_002518_300 Hb_003243_020 Hb_003243_020 Hb_002518_300--Hb_003243_020 Hb_007416_370 Hb_007416_370 Hb_002518_300--Hb_007416_370 Hb_099698_010 Hb_099698_010 Hb_002518_300--Hb_099698_010 Hb_008406_130 Hb_008406_130 Hb_002518_300--Hb_008406_130 Hb_000040_050 Hb_000040_050 Hb_002518_300--Hb_000040_050 Hb_004712_110 Hb_004712_110 Hb_002518_300--Hb_004712_110 Hb_006882_010 Hb_006882_010 Hb_003243_020--Hb_006882_010 Hb_003243_020--Hb_008406_130 Hb_002159_030 Hb_002159_030 Hb_003243_020--Hb_002159_030 Hb_001901_080 Hb_001901_080 Hb_003243_020--Hb_001901_080 Hb_003243_020--Hb_099698_010 Hb_005527_030 Hb_005527_030 Hb_007416_370--Hb_005527_030 Hb_007416_370--Hb_003243_020 Hb_008595_010 Hb_008595_010 Hb_007416_370--Hb_008595_010 Hb_000342_080 Hb_000342_080 Hb_007416_370--Hb_000342_080 Hb_009851_110 Hb_009851_110 Hb_007416_370--Hb_009851_110 Hb_099698_010--Hb_000040_050 Hb_099698_010--Hb_004712_110 Hb_099698_010--Hb_008406_130 Hb_007441_070 Hb_007441_070 Hb_099698_010--Hb_007441_070 Hb_000173_210 Hb_000173_210 Hb_099698_010--Hb_000173_210 Hb_045502_010 Hb_045502_010 Hb_008406_130--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_008406_130--Hb_000544_120 Hb_008406_130--Hb_000040_050 Hb_031073_010 Hb_031073_010 Hb_008406_130--Hb_031073_010 Hb_030627_040 Hb_030627_040 Hb_000040_050--Hb_030627_040 Hb_000040_050--Hb_004712_110 Hb_004376_030 Hb_004376_030 Hb_000040_050--Hb_004376_030 Hb_000261_520 Hb_000261_520 Hb_000040_050--Hb_000261_520 Hb_001534_070 Hb_001534_070 Hb_000040_050--Hb_001534_070 Hb_004712_110--Hb_000173_210 Hb_005228_120 Hb_005228_120 Hb_004712_110--Hb_005228_120 Hb_004712_110--Hb_001534_070 Hb_000940_040 Hb_000940_040 Hb_004712_110--Hb_000940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51248 0.850352 2.71795 2.64783 20.4826 13.1453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.903655 1.35922 1.30296 1.46645 2.81507

CAGE analysis