Hb_002524_010

Information

Type -
Description -
Location Contig2524: 3138-8218
Sequence    

Annotation

kegg
ID pop:POPTR_0006s20250g
description POPTRDRAFT_653536; hypothetical protein
nr
ID XP_002308386.2
description hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HAQ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s20250g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26410: 3276-8268 , PASA_asmbl_26413: 7172-7551 , PASA_asmbl_26415: 4604-4896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002524_010 0.0 - - hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
2 Hb_000086_380 0.0832591011 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
3 Hb_005291_030 0.0853349523 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
4 Hb_000092_100 0.101259916 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
5 Hb_000030_190 0.1020064652 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
6 Hb_003641_060 0.1022414379 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
7 Hb_021596_030 0.1041982106 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
8 Hb_002303_070 0.1047155221 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
9 Hb_000005_220 0.1062884371 - - DNA ligase 1, partial [Glycine soja]
10 Hb_001258_090 0.1063226777 - - PREDICTED: protein spt2-like [Jatropha curcas]
11 Hb_002045_240 0.1065832974 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
12 Hb_000308_030 0.1079044725 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
13 Hb_011883_010 0.1106024572 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
14 Hb_007054_060 0.1107275973 - - -
15 Hb_004881_020 0.1107471956 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
16 Hb_001489_150 0.1108918807 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
17 Hb_183612_040 0.1111745052 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
18 Hb_000179_030 0.1121072864 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
19 Hb_002299_030 0.1133115601 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001842_100 0.1141585815 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]

Gene co-expression network

sample Hb_002524_010 Hb_002524_010 Hb_000086_380 Hb_000086_380 Hb_002524_010--Hb_000086_380 Hb_005291_030 Hb_005291_030 Hb_002524_010--Hb_005291_030 Hb_000092_100 Hb_000092_100 Hb_002524_010--Hb_000092_100 Hb_000030_190 Hb_000030_190 Hb_002524_010--Hb_000030_190 Hb_003641_060 Hb_003641_060 Hb_002524_010--Hb_003641_060 Hb_021596_030 Hb_021596_030 Hb_002524_010--Hb_021596_030 Hb_004310_130 Hb_004310_130 Hb_000086_380--Hb_004310_130 Hb_000086_380--Hb_005291_030 Hb_027472_150 Hb_027472_150 Hb_000086_380--Hb_027472_150 Hb_000086_380--Hb_021596_030 Hb_001579_320 Hb_001579_320 Hb_000086_380--Hb_001579_320 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_002495_040 Hb_002495_040 Hb_000092_100--Hb_002495_040 Hb_000465_430 Hb_000465_430 Hb_000092_100--Hb_000465_430 Hb_001635_170 Hb_001635_170 Hb_000092_100--Hb_001635_170 Hb_001936_080 Hb_001936_080 Hb_000092_100--Hb_001936_080 Hb_096563_010 Hb_096563_010 Hb_000092_100--Hb_096563_010 Hb_003030_070 Hb_003030_070 Hb_000092_100--Hb_003030_070 Hb_000789_310 Hb_000789_310 Hb_000030_190--Hb_000789_310 Hb_000345_380 Hb_000345_380 Hb_000030_190--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000030_190--Hb_001409_020 Hb_007576_110 Hb_007576_110 Hb_000030_190--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_000030_190--Hb_000173_490 Hb_063716_080 Hb_063716_080 Hb_003641_060--Hb_063716_080 Hb_000785_080 Hb_000785_080 Hb_003641_060--Hb_000785_080 Hb_004881_020 Hb_004881_020 Hb_003641_060--Hb_004881_020 Hb_002255_030 Hb_002255_030 Hb_003641_060--Hb_002255_030 Hb_010931_040 Hb_010931_040 Hb_003641_060--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_003641_060--Hb_187739_020 Hb_012506_050 Hb_012506_050 Hb_021596_030--Hb_012506_050 Hb_003438_050 Hb_003438_050 Hb_021596_030--Hb_003438_050 Hb_000638_120 Hb_000638_120 Hb_021596_030--Hb_000638_120 Hb_021596_030--Hb_001579_320 Hb_000130_410 Hb_000130_410 Hb_021596_030--Hb_000130_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3751 10.5537 9.60366 6.85184 7.13451 18.4664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4634 11.7346 5.16447 7.09686 6.8683

CAGE analysis