Hb_002524_020

Information

Type -
Description -
Location Contig2524: 11212-18238
Sequence    

Annotation

kegg
ID rcu:RCOM_0700500
description glycerophosphoryl diester phosphodiesterase, putative
nr
ID XP_002523503.1
description glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
swissprot
ID Q9FGT9
description Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana GN=GDPDL6 PE=2 SV=1
trembl
ID B9SBY4
description Glycerophosphoryl diester phosphodiesterase, putative OS=Ricinus communis GN=RCOM_0700500 PE=4 SV=1
Gene Ontology
ID GO:0008889
description glycerophosphoryl diester phosphodiesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26417: 12846-12984 , PASA_asmbl_26420: 18067-18202
cDNA
(Sanger)
(ID:Location)		 010_F08r.ab1: 12129-12607

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002524_020 0.0 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
2 Hb_000371_060 0.0867383668 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
3 Hb_000676_040 0.0879015597 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
4 Hb_062416_010 0.0980604045 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
5 Hb_001414_040 0.1001000002 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
6 Hb_001268_310 0.100783158 - - -
7 Hb_007765_030 0.1019964138 - - PREDICTED: neutral ceramidase [Jatropha curcas]
8 Hb_000220_120 0.1032985775 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
9 Hb_012940_040 0.106190652 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
10 Hb_001675_010 0.1068247026 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
11 Hb_008667_060 0.1079297915 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
12 Hb_001257_100 0.1085068902 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
13 Hb_001488_040 0.1090114479 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
14 Hb_026198_060 0.1092460847 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
15 Hb_002812_010 0.1103168809 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
16 Hb_011249_060 0.1124207364 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
17 Hb_001195_350 0.1125121325 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
18 Hb_001427_150 0.1132493043 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
19 Hb_015183_100 0.1146972775 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
20 Hb_000174_150 0.1150984674 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]

Gene co-expression network

sample Hb_002524_020 Hb_002524_020 Hb_000371_060 Hb_000371_060 Hb_002524_020--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_002524_020--Hb_000676_040 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_001414_040 Hb_001414_040 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_007765_030 Hb_007765_030 Hb_002524_020--Hb_007765_030 Hb_000371_060--Hb_001414_040 Hb_001259_120 Hb_001259_120 Hb_000371_060--Hb_001259_120 Hb_001195_350 Hb_001195_350 Hb_000371_060--Hb_001195_350 Hb_001257_100 Hb_001257_100 Hb_000371_060--Hb_001257_100 Hb_000059_130 Hb_000059_130 Hb_000371_060--Hb_000059_130 Hb_000270_230 Hb_000270_230 Hb_000676_040--Hb_000270_230 Hb_000676_040--Hb_000371_060 Hb_000676_040--Hb_001257_100 Hb_008667_060 Hb_008667_060 Hb_000676_040--Hb_008667_060 Hb_000676_040--Hb_000059_130 Hb_000631_120 Hb_000631_120 Hb_062416_010--Hb_000631_120 Hb_000059_020 Hb_000059_020 Hb_062416_010--Hb_000059_020 Hb_008948_140 Hb_008948_140 Hb_062416_010--Hb_008948_140 Hb_062416_010--Hb_007765_030 Hb_062416_010--Hb_001259_120 Hb_006907_140 Hb_006907_140 Hb_001414_040--Hb_006907_140 Hb_001414_040--Hb_007765_030 Hb_000009_120 Hb_000009_120 Hb_001414_040--Hb_000009_120 Hb_001341_160 Hb_001341_160 Hb_001414_040--Hb_001341_160 Hb_001414_040--Hb_001259_120 Hb_001862_110 Hb_001862_110 Hb_001268_310--Hb_001862_110 Hb_000926_150 Hb_000926_150 Hb_001268_310--Hb_000926_150 Hb_001268_310--Hb_001257_100 Hb_001268_310--Hb_000631_120 Hb_001268_310--Hb_000676_040 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74935 5.40743 2.59892 2.6453 0.83181 1.29373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08377 1.16288 0.70784 3.85116 1.77544

CAGE analysis