Hb_002524_040

Information

Type -
Description -
Location Contig2524: 93831-105904
Sequence    

Annotation

kegg
ID rcu:RCOM_0700450
description ATP binding protein, putative
nr
ID XP_012071475.1
description PREDICTED: FIP1[V]-like protein [Jatropha curcas]
swissprot
ID F4KDH9
description FIP1[V]-like protein OS=Arabidopsis thaliana GN=FIPS5 PE=1 SV=1
trembl
ID A0A067KR95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04010 PE=4 SV=1
Gene Ontology
ID GO:0005488
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26422: 94063-105628 , PASA_asmbl_26423: 93841-105888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002524_040 0.0 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
2 Hb_004543_030 0.0574844051 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
3 Hb_000139_090 0.0631498696 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
4 Hb_007576_120 0.0781044046 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
5 Hb_030565_090 0.0783406874 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
6 Hb_001247_070 0.0798790984 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
7 Hb_034243_020 0.0807725874 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
8 Hb_002813_010 0.0846698783 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
9 Hb_002291_070 0.0847405228 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
10 Hb_001718_090 0.0860619164 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
11 Hb_001268_350 0.0862606235 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
12 Hb_000002_040 0.0866962765 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
13 Hb_010315_090 0.0877130989 - - suppressor of ty, putative [Ricinus communis]
14 Hb_000012_140 0.0887255829 - - conserved hypothetical protein [Ricinus communis]
15 Hb_033883_060 0.0904923319 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
16 Hb_000529_260 0.0907388415 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
17 Hb_004718_010 0.0907974506 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
18 Hb_161072_030 0.0915094097 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
19 Hb_000320_380 0.0916466309 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
20 Hb_000320_200 0.0916762778 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002524_040 Hb_002524_040 Hb_004543_030 Hb_004543_030 Hb_002524_040--Hb_004543_030 Hb_000139_090 Hb_000139_090 Hb_002524_040--Hb_000139_090 Hb_007576_120 Hb_007576_120 Hb_002524_040--Hb_007576_120 Hb_030565_090 Hb_030565_090 Hb_002524_040--Hb_030565_090 Hb_001247_070 Hb_001247_070 Hb_002524_040--Hb_001247_070 Hb_034243_020 Hb_034243_020 Hb_002524_040--Hb_034243_020 Hb_004543_030--Hb_034243_020 Hb_004543_030--Hb_007576_120 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090 Hb_000174_220 Hb_000174_220 Hb_000139_090--Hb_000174_220 Hb_000139_090--Hb_001247_070 Hb_000139_090--Hb_007576_120 Hb_000002_040 Hb_000002_040 Hb_000139_090--Hb_000002_040 Hb_015807_070 Hb_015807_070 Hb_000139_090--Hb_015807_070 Hb_007576_120--Hb_034243_020 Hb_001493_040 Hb_001493_040 Hb_007576_120--Hb_001493_040 Hb_005539_090 Hb_005539_090 Hb_007576_120--Hb_005539_090 Hb_000012_140 Hb_000012_140 Hb_007576_120--Hb_000012_140 Hb_030565_090--Hb_000997_030 Hb_000363_130 Hb_000363_130 Hb_030565_090--Hb_000363_130 Hb_000264_100 Hb_000264_100 Hb_030565_090--Hb_000264_100 Hb_030565_090--Hb_034243_020 Hb_033883_060 Hb_033883_060 Hb_030565_090--Hb_033883_060 Hb_031042_070 Hb_031042_070 Hb_030565_090--Hb_031042_070 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_001247_070--Hb_000174_220 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_034243_020--Hb_001493_040 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.0084 32.4491 7.77988 7.23519 32.2826 32.873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7928 13.1042 15.774 16.3526 19.653

CAGE analysis