Hb_002526_020

Information

Type -
Description -
Location Contig2526: 45176-49235
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26434: 47446-47595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002526_020 0.0 - - -
2 Hb_003784_050 0.1747188309 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
3 Hb_011224_040 0.1807691303 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
4 Hb_100180_010 0.2037494016 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
5 Hb_003376_380 0.2075160095 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
6 Hb_000500_210 0.2084155636 - - -
7 Hb_000434_020 0.2215955137 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
8 Hb_000270_610 0.2218668034 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
9 Hb_001434_070 0.2237308605 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
10 Hb_004429_110 0.2257346963 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
11 Hb_002759_110 0.2298246806 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
12 Hb_000617_110 0.2307374218 - - translationally controlled tumor protein [Hevea brasiliensis]
13 Hb_000454_180 0.2313111076 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
14 Hb_044653_060 0.2329211988 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
15 Hb_003124_140 0.2332303928 - - hypothetical protein Csa_4G182240 [Cucumis sativus]
16 Hb_004567_020 0.234273721 - - Small ubiquitin-related modifier 2 [Morus notabilis]
17 Hb_001140_240 0.2369403482 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_060618_010 0.2440065049 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_000046_200 0.2445486289 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
20 Hb_000431_160 0.2475780787 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_002526_020 Hb_002526_020 Hb_003784_050 Hb_003784_050 Hb_002526_020--Hb_003784_050 Hb_011224_040 Hb_011224_040 Hb_002526_020--Hb_011224_040 Hb_100180_010 Hb_100180_010 Hb_002526_020--Hb_100180_010 Hb_003376_380 Hb_003376_380 Hb_002526_020--Hb_003376_380 Hb_000500_210 Hb_000500_210 Hb_002526_020--Hb_000500_210 Hb_000434_020 Hb_000434_020 Hb_002526_020--Hb_000434_020 Hb_004209_030 Hb_004209_030 Hb_003784_050--Hb_004209_030 Hb_001434_070 Hb_001434_070 Hb_003784_050--Hb_001434_070 Hb_004567_020 Hb_004567_020 Hb_003784_050--Hb_004567_020 Hb_003784_050--Hb_100180_010 Hb_000281_230 Hb_000281_230 Hb_003784_050--Hb_000281_230 Hb_011224_040--Hb_000500_210 Hb_000046_200 Hb_000046_200 Hb_011224_040--Hb_000046_200 Hb_011224_040--Hb_000434_020 Hb_004429_110 Hb_004429_110 Hb_011224_040--Hb_004429_110 Hb_000975_270 Hb_000975_270 Hb_011224_040--Hb_000975_270 Hb_100180_010--Hb_004429_110 Hb_100180_010--Hb_004567_020 Hb_001307_210 Hb_001307_210 Hb_100180_010--Hb_001307_210 Hb_007218_100 Hb_007218_100 Hb_100180_010--Hb_007218_100 Hb_000302_290 Hb_000302_290 Hb_100180_010--Hb_000302_290 Hb_002260_160 Hb_002260_160 Hb_100180_010--Hb_002260_160 Hb_003398_020 Hb_003398_020 Hb_003376_380--Hb_003398_020 Hb_003057_020 Hb_003057_020 Hb_003376_380--Hb_003057_020 Hb_000239_110 Hb_000239_110 Hb_003376_380--Hb_000239_110 Hb_002900_130 Hb_002900_130 Hb_003376_380--Hb_002900_130 Hb_001449_100 Hb_001449_100 Hb_003376_380--Hb_001449_100 Hb_001623_070 Hb_001623_070 Hb_003376_380--Hb_001623_070 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030 Hb_000434_020--Hb_000500_210 Hb_065866_010 Hb_065866_010 Hb_000434_020--Hb_065866_010 Hb_002759_110 Hb_002759_110 Hb_000434_020--Hb_002759_110 Hb_187024_070 Hb_187024_070 Hb_000434_020--Hb_187024_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.159504 0.254134 0.0600367 0.0549881 0.145838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4026 3.10554 0.170784 0.290699 0.377125

CAGE analysis