Hb_002527_020

Information

Type -
Description -
Location Contig2527: 14833-16077
Sequence    

Annotation

kegg
ID tcc:TCM_012014
description F-box and associated interaction domains-containing-like protein
nr
ID XP_012087183.1
description PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
swissprot
ID Q9SY20
description F-box protein At1g30790 OS=Arabidopsis thaliana GN=At1g30790 PE=2 SV=2
trembl
ID A0A067JMR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20412 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002527_020 0.0 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
2 Hb_002857_010 0.0015189922 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_043346_010 0.0037316186 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
4 Hb_001695_050 0.0066563227 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
5 Hb_008493_010 0.0137328682 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
6 Hb_000062_040 0.0140013105 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
7 Hb_003623_060 0.014914222 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000275_030 0.0249740937 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001900_050 0.0285807738 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
10 Hb_004643_050 0.0457020473 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
11 Hb_003003_060 0.0480895719 - - -
12 Hb_159229_030 0.0484672412 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
13 Hb_091378_010 0.0491246638 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_002457_010 0.0503988901 - - polyprotein [Oryza australiensis]
15 Hb_160190_010 0.051531037 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_055467_010 0.0568465009 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
17 Hb_000152_470 0.0658720575 - - -
18 Hb_000330_110 0.0673789707 - - -
19 Hb_009423_020 0.0700685554 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_006351_100 0.0765068681 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_002527_020 Hb_002527_020 Hb_002857_010 Hb_002857_010 Hb_002527_020--Hb_002857_010 Hb_043346_010 Hb_043346_010 Hb_002527_020--Hb_043346_010 Hb_001695_050 Hb_001695_050 Hb_002527_020--Hb_001695_050 Hb_008493_010 Hb_008493_010 Hb_002527_020--Hb_008493_010 Hb_000062_040 Hb_000062_040 Hb_002527_020--Hb_000062_040 Hb_003623_060 Hb_003623_060 Hb_002527_020--Hb_003623_060 Hb_002857_010--Hb_043346_010 Hb_002857_010--Hb_001695_050 Hb_002857_010--Hb_008493_010 Hb_002857_010--Hb_000062_040 Hb_002857_010--Hb_003623_060 Hb_043346_010--Hb_001695_050 Hb_043346_010--Hb_008493_010 Hb_043346_010--Hb_000062_040 Hb_043346_010--Hb_003623_060 Hb_001695_050--Hb_008493_010 Hb_001695_050--Hb_000062_040 Hb_001695_050--Hb_003623_060 Hb_008493_010--Hb_000062_040 Hb_008493_010--Hb_003623_060 Hb_000062_040--Hb_003623_060 Hb_000275_030 Hb_000275_030 Hb_000062_040--Hb_000275_030 Hb_001900_050 Hb_001900_050 Hb_000062_040--Hb_001900_050 Hb_003623_060--Hb_000275_030 Hb_003623_060--Hb_001900_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.108276 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.190017

CAGE analysis