Hb_002527_030

Information

Type -
Description -
Location Contig2527: 19452-23767
Sequence    

Annotation

kegg
ID rcu:RCOM_1333050
description hypothetical protein
nr
ID XP_012092675.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067J989
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06938 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein root primordium defective 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26437: 20449-23691 , PASA_asmbl_26438: 20463-21222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002527_030 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
2 Hb_000345_170 0.0727721241 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
3 Hb_000116_180 0.0775154272 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
4 Hb_108216_040 0.0844125191 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
5 Hb_000645_050 0.0870303665 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
6 Hb_000051_070 0.0873005135 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
7 Hb_000085_060 0.0879069355 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
8 Hb_006915_070 0.0881143967 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
9 Hb_002876_110 0.0907620202 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000392_300 0.0934158835 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
11 Hb_028390_010 0.0936474096 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
12 Hb_008785_040 0.0943174563 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
13 Hb_000367_130 0.0959593233 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000922_330 0.0967954605 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
15 Hb_000025_110 0.0972983743 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
16 Hb_002681_070 0.0973946476 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
17 Hb_007044_080 0.0978206545 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
18 Hb_003406_010 0.0978890929 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
19 Hb_000487_110 0.0979914575 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
20 Hb_000794_050 0.0981880395 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_002527_030 Hb_002527_030 Hb_000345_170 Hb_000345_170 Hb_002527_030--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_002527_030--Hb_000116_180 Hb_108216_040 Hb_108216_040 Hb_002527_030--Hb_108216_040 Hb_000645_050 Hb_000645_050 Hb_002527_030--Hb_000645_050 Hb_000051_070 Hb_000051_070 Hb_002527_030--Hb_000051_070 Hb_000085_060 Hb_000085_060 Hb_002527_030--Hb_000085_060 Hb_002890_020 Hb_002890_020 Hb_000345_170--Hb_002890_020 Hb_154745_010 Hb_154745_010 Hb_000345_170--Hb_154745_010 Hb_156973_010 Hb_156973_010 Hb_000345_170--Hb_156973_010 Hb_006915_070 Hb_006915_070 Hb_000345_170--Hb_006915_070 Hb_023386_040 Hb_023386_040 Hb_000345_170--Hb_023386_040 Hb_000207_310 Hb_000207_310 Hb_000116_180--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_003849_250 Hb_003849_250 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_000100_070 Hb_000100_070 Hb_108216_040--Hb_000100_070 Hb_000640_320 Hb_000640_320 Hb_108216_040--Hb_000640_320 Hb_008143_030 Hb_008143_030 Hb_108216_040--Hb_008143_030 Hb_108216_040--Hb_000207_310 Hb_108216_040--Hb_000116_180 Hb_002400_180 Hb_002400_180 Hb_108216_040--Hb_002400_180 Hb_003406_010 Hb_003406_010 Hb_000645_050--Hb_003406_010 Hb_054865_100 Hb_054865_100 Hb_000645_050--Hb_054865_100 Hb_000327_120 Hb_000327_120 Hb_000645_050--Hb_000327_120 Hb_001369_180 Hb_001369_180 Hb_000645_050--Hb_001369_180 Hb_003030_070 Hb_003030_070 Hb_000645_050--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_000645_050--Hb_007218_080 Hb_001006_140 Hb_001006_140 Hb_000051_070--Hb_001006_140 Hb_000152_380 Hb_000152_380 Hb_000051_070--Hb_000152_380 Hb_000815_210 Hb_000815_210 Hb_000051_070--Hb_000815_210 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_001369_420 Hb_001369_420 Hb_000051_070--Hb_001369_420 Hb_003952_070 Hb_003952_070 Hb_000051_070--Hb_003952_070 Hb_001124_120 Hb_001124_120 Hb_000085_060--Hb_001124_120 Hb_076787_010 Hb_076787_010 Hb_000085_060--Hb_076787_010 Hb_031939_010 Hb_031939_010 Hb_000085_060--Hb_031939_010 Hb_001014_010 Hb_001014_010 Hb_000085_060--Hb_001014_010 Hb_000085_060--Hb_003406_010 Hb_000085_060--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3135 8.75098 5.84212 7.49158 22.7448 18.1649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.517 13.4145 12.0894 6.07231 13.2417

CAGE analysis