Hb_002529_060

Information

Type -
Description -
Location Contig2529: 113624-117395
Sequence    

Annotation

kegg
ID pmum:103329744
description putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179
nr
ID XP_012066361.1
description PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
swissprot
ID Q54SZ9
description Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 OS=Dictyostelium discoideum GN=DDB_G0282107 PE=3 SV=1
trembl
ID M5WJP8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010930mg PE=4 SV=1
Gene Ontology
ID GO:0044464
description phosphatidylglycerol phosphatidylinositol transfer protein ddb_g0282179

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26451: 113489-117356 , PASA_asmbl_26453: 116369-117364 , PASA_asmbl_26454: 115679-116061 , PASA_asmbl_26456: 33029-116465
cDNA
(Sanger)
(ID:Location)		 003_P24.ab1: 113490-117350 , 031_P21.ab1: 113503-117356

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002529_060 0.0 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
2 Hb_006816_390 0.080570277 - - protein phosphatase, putative [Ricinus communis]
3 Hb_000645_050 0.0883931145 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
4 Hb_000465_430 0.0906921583 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
5 Hb_002495_040 0.0912069475 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
6 Hb_003502_080 0.0915952076 - - vacuolar protein sorting, putative [Ricinus communis]
7 Hb_000322_100 0.093711463 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
8 Hb_002681_050 0.0958216763 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
9 Hb_003030_070 0.0962563593 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
10 Hb_001369_180 0.0986839675 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
11 Hb_012092_010 0.0995255324 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
12 Hb_000494_040 0.1004748709 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
13 Hb_006951_020 0.1017485082 - - Rop3 [Hevea brasiliensis]
14 Hb_000042_270 0.1018280279 - - myosin vIII, putative [Ricinus communis]
15 Hb_000606_090 0.1022222853 - - Far upstream element-binding protein, putative [Ricinus communis]
16 Hb_010381_120 0.1028328684 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
17 Hb_000123_090 0.1033318544 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
18 Hb_000943_070 0.1037189069 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
19 Hb_007477_080 0.1043355613 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007904_200 0.1045254616 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002529_060 Hb_002529_060 Hb_006816_390 Hb_006816_390 Hb_002529_060--Hb_006816_390 Hb_000645_050 Hb_000645_050 Hb_002529_060--Hb_000645_050 Hb_000465_430 Hb_000465_430 Hb_002529_060--Hb_000465_430 Hb_002495_040 Hb_002495_040 Hb_002529_060--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_002529_060--Hb_003502_080 Hb_000322_100 Hb_000322_100 Hb_002529_060--Hb_000322_100 Hb_007477_080 Hb_007477_080 Hb_006816_390--Hb_007477_080 Hb_000034_050 Hb_000034_050 Hb_006816_390--Hb_000034_050 Hb_000134_090 Hb_000134_090 Hb_006816_390--Hb_000134_090 Hb_001100_050 Hb_001100_050 Hb_006816_390--Hb_001100_050 Hb_000042_270 Hb_000042_270 Hb_006816_390--Hb_000042_270 Hb_003406_010 Hb_003406_010 Hb_000645_050--Hb_003406_010 Hb_054865_100 Hb_054865_100 Hb_000645_050--Hb_054865_100 Hb_000327_120 Hb_000327_120 Hb_000645_050--Hb_000327_120 Hb_001369_180 Hb_001369_180 Hb_000645_050--Hb_001369_180 Hb_003030_070 Hb_003030_070 Hb_000645_050--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_000645_050--Hb_007218_080 Hb_012092_010 Hb_012092_010 Hb_000465_430--Hb_012092_010 Hb_000465_430--Hb_002495_040 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_005016_170 Hb_005016_170 Hb_000465_430--Hb_005016_170 Hb_000092_100 Hb_000092_100 Hb_000465_430--Hb_000092_100 Hb_002495_040--Hb_003030_070 Hb_002495_040--Hb_001369_180 Hb_002495_040--Hb_012092_010 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080 Hb_003502_080--Hb_005016_170 Hb_003502_080--Hb_033843_010 Hb_023001_050 Hb_023001_050 Hb_003502_080--Hb_023001_050 Hb_021409_020 Hb_021409_020 Hb_003502_080--Hb_021409_020 Hb_000204_040 Hb_000204_040 Hb_003502_080--Hb_000204_040 Hb_000322_100--Hb_000034_050 Hb_008695_120 Hb_008695_120 Hb_000322_100--Hb_008695_120 Hb_007336_020 Hb_007336_020 Hb_000322_100--Hb_007336_020 Hb_008864_110 Hb_008864_110 Hb_000322_100--Hb_008864_110 Hb_031091_010 Hb_031091_010 Hb_000322_100--Hb_031091_010 Hb_006951_020 Hb_006951_020 Hb_000322_100--Hb_006951_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.0814 38.3349 47.3052 66.366 101.703 126.894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.683 56.8685 62.3049 16.3942 35.2799

CAGE analysis