Hb_002529_100

Information

Type -
Description -
Location Contig2529: 150110-154334
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09870g
description POPTRDRAFT_709269; hypothetical protein
nr
ID XP_012086820.1
description PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20538 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26461: 150516-154200 , PASA_asmbl_26462: 151035-154260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002529_100 0.0 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
2 Hb_001257_080 0.0738653565 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001951_110 0.0763405515 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
4 Hb_000798_030 0.0812120987 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
5 Hb_000023_230 0.0834766335 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
6 Hb_000045_190 0.0847343195 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
7 Hb_000056_340 0.0859562487 - - 60S ribosomal protein L34A [Hevea brasiliensis]
8 Hb_022250_040 0.0861758499 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
9 Hb_000412_110 0.0866707468 - - Rop4 [Hevea brasiliensis]
10 Hb_006775_080 0.0900402905 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
11 Hb_004012_010 0.0906035528 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
12 Hb_024835_030 0.0909817886 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
13 Hb_007741_050 0.0926085052 - - vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_000417_110 0.0930506982 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
15 Hb_000008_320 0.0946121165 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
16 Hb_000634_050 0.0946405434 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
17 Hb_023386_080 0.0952672418 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
18 Hb_010172_070 0.0955268838 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
19 Hb_001623_240 0.0963880366 - - hypothetical protein VITISV_004933 [Vitis vinifera]
20 Hb_003185_020 0.097225871 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]

Gene co-expression network

sample Hb_002529_100 Hb_002529_100 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_000045_190 Hb_000045_190 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_002205_080 Hb_002205_080 Hb_001257_080--Hb_002205_080 Hb_007741_050 Hb_007741_050 Hb_001257_080--Hb_007741_050 Hb_007101_150 Hb_007101_150 Hb_001257_080--Hb_007101_150 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_001257_080--Hb_000798_030 Hb_001804_040 Hb_001804_040 Hb_001951_110--Hb_001804_040 Hb_000866_300 Hb_000866_300 Hb_001951_110--Hb_000866_300 Hb_000417_110 Hb_000417_110 Hb_001951_110--Hb_000417_110 Hb_004204_030 Hb_004204_030 Hb_001951_110--Hb_004204_030 Hb_000392_270 Hb_000392_270 Hb_001951_110--Hb_000392_270 Hb_000798_030--Hb_000417_110 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000634_050 Hb_000634_050 Hb_000798_030--Hb_000634_050 Hb_000798_030--Hb_000045_190 Hb_000798_030--Hb_007741_050 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120 Hb_023226_040 Hb_023226_040 Hb_000023_230--Hb_023226_040 Hb_000023_230--Hb_001257_080 Hb_003018_120 Hb_003018_120 Hb_000023_230--Hb_003018_120 Hb_004657_050 Hb_004657_050 Hb_000023_230--Hb_004657_050 Hb_000023_230--Hb_004204_120 Hb_000045_190--Hb_000634_050 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_000056_340--Hb_007101_150 Hb_003018_200 Hb_003018_200 Hb_000056_340--Hb_003018_200 Hb_007672_010 Hb_007672_010 Hb_000056_340--Hb_007672_010 Hb_001828_090 Hb_001828_090 Hb_000056_340--Hb_001828_090 Hb_024835_030 Hb_024835_030 Hb_000056_340--Hb_024835_030 Hb_004012_010 Hb_004012_010 Hb_000056_340--Hb_004012_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
131.836 32.2054 26.3011 24.512 81.7685 78.9218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
181.338 164.997 95.8344 34.7143 10.4013

CAGE analysis