Hb_002530_010

Information

Type -
Description -
Location Contig2530: 17579-19334
Sequence    

Annotation

kegg
ID mdm:103429212
description RNA polymerase II C-terminal domain phosphatase-like 4
nr
ID KCW81208.1
description hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CRV1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02580 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase ii c-terminal domain phosphatase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002530_010 0.0 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
2 Hb_006588_070 0.0890394933 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
3 Hb_000959_270 0.094085965 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
4 Hb_002235_210 0.0973112444 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
5 Hb_003299_030 0.0996105912 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
6 Hb_001195_260 0.0997639793 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
7 Hb_011310_210 0.0999101758 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
8 Hb_000785_030 0.1021912954 - - hypothetical protein RCOM_0808030 [Ricinus communis]
9 Hb_004631_180 0.1029213361 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
10 Hb_000261_250 0.1030217362 - - elongation factor 1-alpha [Lepidium sativum]
11 Hb_001051_080 0.1036438005 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
12 Hb_008511_030 0.1046020469 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
13 Hb_002942_050 0.1046424042 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
14 Hb_032920_060 0.1059424168 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
15 Hb_006916_040 0.1077063602 - - 60S ribosomal protein L7a, putative [Ricinus communis]
16 Hb_002272_020 0.1082514803 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
17 Hb_003371_150 0.1087349286 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
18 Hb_058972_010 0.1095576139 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
19 Hb_002192_080 0.1113748031 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
20 Hb_000081_010 0.1117790819 - - hypothetical protein B456_012G056000 [Gossypium raimondii]

Gene co-expression network

sample Hb_002530_010 Hb_002530_010 Hb_006588_070 Hb_006588_070 Hb_002530_010--Hb_006588_070 Hb_000959_270 Hb_000959_270 Hb_002530_010--Hb_000959_270 Hb_002235_210 Hb_002235_210 Hb_002530_010--Hb_002235_210 Hb_003299_030 Hb_003299_030 Hb_002530_010--Hb_003299_030 Hb_001195_260 Hb_001195_260 Hb_002530_010--Hb_001195_260 Hb_011310_210 Hb_011310_210 Hb_002530_010--Hb_011310_210 Hb_002872_030 Hb_002872_030 Hb_006588_070--Hb_002872_030 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_027428_010 Hb_027428_010 Hb_006588_070--Hb_027428_010 Hb_022132_050 Hb_022132_050 Hb_006588_070--Hb_022132_050 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120 Hb_000732_120 Hb_000732_120 Hb_000959_270--Hb_000732_120 Hb_033153_070 Hb_033153_070 Hb_000959_270--Hb_033153_070 Hb_006960_050 Hb_006960_050 Hb_000959_270--Hb_006960_050 Hb_000785_030 Hb_000785_030 Hb_000959_270--Hb_000785_030 Hb_008511_030 Hb_008511_030 Hb_000959_270--Hb_008511_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180 Hb_002235_210--Hb_004631_180 Hb_002235_210--Hb_001051_080 Hb_003893_030 Hb_003893_030 Hb_002235_210--Hb_003893_030 Hb_012322_020 Hb_012322_020 Hb_002235_210--Hb_012322_020 Hb_006916_040 Hb_006916_040 Hb_002235_210--Hb_006916_040 Hb_004310_020 Hb_004310_020 Hb_002235_210--Hb_004310_020 Hb_002043_090 Hb_002043_090 Hb_003299_030--Hb_002043_090 Hb_000457_050 Hb_000457_050 Hb_003299_030--Hb_000457_050 Hb_003299_030--Hb_008511_030 Hb_002272_020 Hb_002272_020 Hb_003299_030--Hb_002272_020 Hb_111198_010 Hb_111198_010 Hb_003299_030--Hb_111198_010 Hb_003086_190 Hb_003086_190 Hb_003299_030--Hb_003086_190 Hb_058972_010 Hb_058972_010 Hb_001195_260--Hb_058972_010 Hb_010315_060 Hb_010315_060 Hb_001195_260--Hb_010315_060 Hb_000392_230 Hb_000392_230 Hb_001195_260--Hb_000392_230 Hb_004122_040 Hb_004122_040 Hb_001195_260--Hb_004122_040 Hb_000610_010 Hb_000610_010 Hb_001195_260--Hb_000610_010 Hb_000751_030 Hb_000751_030 Hb_001195_260--Hb_000751_030 Hb_008120_030 Hb_008120_030 Hb_011310_210--Hb_008120_030 Hb_000777_050 Hb_000777_050 Hb_011310_210--Hb_000777_050 Hb_003549_090 Hb_003549_090 Hb_011310_210--Hb_003549_090 Hb_002942_050 Hb_002942_050 Hb_011310_210--Hb_002942_050 Hb_011310_130 Hb_011310_130 Hb_011310_210--Hb_011310_130 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1856 30.8046 34.8002 30.7972 30.2517 49.3657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.125 30.5707 16.6992 11.9573 8.6327

CAGE analysis