Hb_002534_020

Information

Type -
Description -
Location Contig2534: 6747-7768
Sequence    

Annotation

kegg
ID rcu:RCOM_1471590
description chlorophyll A/B binding protein, putative
nr
ID XP_012469986.1
description PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
swissprot
ID P27521
description Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1
trembl
ID A0A0D2QLW2
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G074300 PE=4 SV=1
Gene Ontology
ID GO:0016020
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26482: 6717-8010 , PASA_asmbl_26486: 6717-8010
cDNA
(Sanger)
(ID:Location)		 014_H11.ab1: 6762-7733 , 016_J05.ab1: 6762-7776 , 031_B19.ab1: 6762-7724 , 051_M10.ab1: 6762-7733

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_020 0.0 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
2 Hb_001277_350 0.0425252676 - - early light-induced protein, putative [Ricinus communis]
3 Hb_146255_030 0.0500537508 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
4 Hb_000497_050 0.0502989358 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
5 Hb_002752_020 0.0523237343 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
6 Hb_011724_040 0.0569251542 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
7 Hb_004032_400 0.057807504 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
8 Hb_004452_070 0.0594371341 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
9 Hb_000230_420 0.0594509393 - - GS [Hevea brasiliensis subsp. brasiliensis]
10 Hb_000179_010 0.0633278107 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
11 Hb_013405_110 0.0636646957 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_001307_050 0.0638725917 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
13 Hb_009707_020 0.0658862784 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
14 Hb_002121_050 0.0661089306 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
15 Hb_000139_170 0.0684991903 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
16 Hb_005743_050 0.0705566211 - - unnamed protein product [Coffea canephora]
17 Hb_163566_020 0.0708614102 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_007187_010 0.0709791013 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
19 Hb_006132_080 0.0713983422 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
20 Hb_002328_080 0.0714023423 - - short-chain dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002534_020 Hb_002534_020 Hb_001277_350 Hb_001277_350 Hb_002534_020--Hb_001277_350 Hb_146255_030 Hb_146255_030 Hb_002534_020--Hb_146255_030 Hb_000497_050 Hb_000497_050 Hb_002534_020--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_002534_020--Hb_002752_020 Hb_011724_040 Hb_011724_040 Hb_002534_020--Hb_011724_040 Hb_004032_400 Hb_004032_400 Hb_002534_020--Hb_004032_400 Hb_001277_350--Hb_000497_050 Hb_001277_350--Hb_002752_020 Hb_001277_350--Hb_146255_030 Hb_001958_060 Hb_001958_060 Hb_001277_350--Hb_001958_060 Hb_001975_100 Hb_001975_100 Hb_001277_350--Hb_001975_100 Hb_146255_030--Hb_004032_400 Hb_146255_030--Hb_002752_020 Hb_146255_030--Hb_000497_050 Hb_001307_050 Hb_001307_050 Hb_146255_030--Hb_001307_050 Hb_000497_050--Hb_002752_020 Hb_004338_050 Hb_004338_050 Hb_000497_050--Hb_004338_050 Hb_000497_050--Hb_001307_050 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050 Hb_002752_020--Hb_004032_400 Hb_008225_050 Hb_008225_050 Hb_002752_020--Hb_008225_050 Hb_002752_020--Hb_004338_050 Hb_001534_060 Hb_001534_060 Hb_011724_040--Hb_001534_060 Hb_003632_020 Hb_003632_020 Hb_011724_040--Hb_003632_020 Hb_006132_080 Hb_006132_080 Hb_011724_040--Hb_006132_080 Hb_011724_040--Hb_002121_050 Hb_033187_010 Hb_033187_010 Hb_011724_040--Hb_033187_010 Hb_000418_130 Hb_000418_130 Hb_004032_400--Hb_000418_130 Hb_004837_010 Hb_004837_010 Hb_004032_400--Hb_004837_010 Hb_009588_010 Hb_009588_010 Hb_004032_400--Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_004032_400--Hb_002028_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 30.9834 1155.56 604.221 0.0554651 0.130837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.761821 1.14819 0 1.49295 2026.39

CAGE analysis