Hb_002534_040

Information

Type -
Description -
Location Contig2534: 24833-25495
Sequence    

Annotation

kegg
ID rcu:RCOM_1471620
description Calmodulin, putative
nr
ID XP_002514744.1
description Calmodulin, putative [Ricinus communis]
swissprot
ID Q9MBG5
description Probable calcium-binding protein CML30 OS=Arabidopsis thaliana GN=CML30 PE=2 SV=1
trembl
ID B9RLX5
description Calmodulin, putative OS=Ricinus communis GN=RCOM_1471620 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26489: 25018-25463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_040 0.0 - - Calmodulin, putative [Ricinus communis]
2 Hb_000668_190 0.0749439557 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
3 Hb_000340_070 0.1096468077 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
4 Hb_000413_220 0.1153109761 - - PREDICTED: kinesin-1 [Jatropha curcas]
5 Hb_002435_010 0.1156104171 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
6 Hb_004724_250 0.1258250275 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_010672_040 0.1328754862 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
8 Hb_002486_090 0.1345128701 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
9 Hb_010578_020 0.1363177358 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000739_250 0.1395915333 - - PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
11 Hb_048141_060 0.145639535 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
12 Hb_000164_030 0.1468759753 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
13 Hb_004650_040 0.1481503529 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
14 Hb_064971_010 0.1514121848 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
15 Hb_000280_100 0.1537363707 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
16 Hb_000574_180 0.1550000011 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
17 Hb_012633_010 0.1569514489 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
18 Hb_052764_120 0.1599159791 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
19 Hb_000157_060 0.1622926832 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
20 Hb_150745_010 0.1624511031 - - hypothetical protein JCGZ_17337 [Jatropha curcas]

Gene co-expression network

sample Hb_002534_040 Hb_002534_040 Hb_000668_190 Hb_000668_190 Hb_002534_040--Hb_000668_190 Hb_000340_070 Hb_000340_070 Hb_002534_040--Hb_000340_070 Hb_000413_220 Hb_000413_220 Hb_002534_040--Hb_000413_220 Hb_002435_010 Hb_002435_010 Hb_002534_040--Hb_002435_010 Hb_004724_250 Hb_004724_250 Hb_002534_040--Hb_004724_250 Hb_010672_040 Hb_010672_040 Hb_002534_040--Hb_010672_040 Hb_000668_190--Hb_000413_220 Hb_000739_250 Hb_000739_250 Hb_000668_190--Hb_000739_250 Hb_000574_180 Hb_000574_180 Hb_000668_190--Hb_000574_180 Hb_000164_030 Hb_000164_030 Hb_000668_190--Hb_000164_030 Hb_000668_190--Hb_002435_010 Hb_000604_080 Hb_000604_080 Hb_000340_070--Hb_000604_080 Hb_000340_070--Hb_002435_010 Hb_000574_270 Hb_000574_270 Hb_000340_070--Hb_000574_270 Hb_150745_010 Hb_150745_010 Hb_000340_070--Hb_150745_010 Hb_000340_070--Hb_000668_190 Hb_000413_220--Hb_000574_180 Hb_000256_170 Hb_000256_170 Hb_000413_220--Hb_000256_170 Hb_000413_220--Hb_000739_250 Hb_000413_220--Hb_150745_010 Hb_001754_100 Hb_001754_100 Hb_000413_220--Hb_001754_100 Hb_052764_120 Hb_052764_120 Hb_002435_010--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002435_010--Hb_002267_010 Hb_010578_020 Hb_010578_020 Hb_002435_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_002435_010--Hb_003207_220 Hb_048141_060 Hb_048141_060 Hb_002435_010--Hb_048141_060 Hb_004724_250--Hb_000164_030 Hb_004724_250--Hb_048141_060 Hb_004724_250--Hb_010578_020 Hb_064971_010 Hb_064971_010 Hb_004724_250--Hb_064971_010 Hb_004724_250--Hb_002267_010 Hb_004724_250--Hb_052764_120 Hb_124302_010 Hb_124302_010 Hb_010672_040--Hb_124302_010 Hb_003147_020 Hb_003147_020 Hb_010672_040--Hb_003147_020 Hb_032223_010 Hb_032223_010 Hb_010672_040--Hb_032223_010 Hb_000165_270 Hb_000165_270 Hb_010672_040--Hb_000165_270 Hb_001433_120 Hb_001433_120 Hb_010672_040--Hb_001433_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0768425 0.754543 0.0730578 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0280004 0

CAGE analysis