Hb_002534_050

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2534: 29435-32365
Sequence    

Annotation

kegg
ID rcu:RCOM_1471640
description zinc finger protein, putative
nr
ID KDP31262.1
description hypothetical protein JCGZ_11638 [Jatropha curcas]
swissprot
ID Q8LFV3
description Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2
trembl
ID A0A067K585
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11638 PE=4 SV=1
Gene Ontology
ID GO:0003677
description cyclic dof factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26490: 29390-32187 , PASA_asmbl_26491: 31664-32224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_050 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
2 Hb_009040_010 0.089809175 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
3 Hb_000071_140 0.1031792918 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
4 Hb_001662_170 0.1087210943 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_011360_090 0.1134922237 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
6 Hb_001489_120 0.1150315125 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
7 Hb_001258_150 0.1193199745 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
8 Hb_000069_730 0.1222689363 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
9 Hb_000649_300 0.1275944453 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
10 Hb_004032_310 0.128495722 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
11 Hb_002793_060 0.1326047758 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
12 Hb_001053_200 0.1335006715 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
13 Hb_000803_060 0.1376152413 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
14 Hb_012787_040 0.1423151413 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
15 Hb_005496_160 0.1437963341 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
16 Hb_003216_050 0.1447240287 - - PREDICTED: OBERON-like protein [Jatropha curcas]
17 Hb_132840_090 0.1447816322 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
18 Hb_006111_030 0.1519122134 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
19 Hb_006414_020 0.1521953029 transcription factor TF Family: MYB -
20 Hb_000454_140 0.1523387437 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]

Gene co-expression network

sample Hb_002534_050 Hb_002534_050 Hb_009040_010 Hb_009040_010 Hb_002534_050--Hb_009040_010 Hb_000071_140 Hb_000071_140 Hb_002534_050--Hb_000071_140 Hb_001662_170 Hb_001662_170 Hb_002534_050--Hb_001662_170 Hb_011360_090 Hb_011360_090 Hb_002534_050--Hb_011360_090 Hb_001489_120 Hb_001489_120 Hb_002534_050--Hb_001489_120 Hb_001258_150 Hb_001258_150 Hb_002534_050--Hb_001258_150 Hb_009040_010--Hb_011360_090 Hb_009040_010--Hb_001258_150 Hb_009040_010--Hb_000071_140 Hb_132840_090 Hb_132840_090 Hb_009040_010--Hb_132840_090 Hb_009040_010--Hb_001662_170 Hb_000071_140--Hb_001489_120 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_004032_310 Hb_004032_310 Hb_000071_140--Hb_004032_310 Hb_000071_140--Hb_001258_150 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_001662_170--Hb_012787_040 Hb_001662_170--Hb_004032_310 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_001662_170--Hb_011360_090 Hb_011360_090--Hb_012787_040 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_000803_060 Hb_000803_060 Hb_011360_090--Hb_000803_060 Hb_006414_020 Hb_006414_020 Hb_011360_090--Hb_006414_020 Hb_001489_120--Hb_001258_150 Hb_001489_120--Hb_004032_310 Hb_001489_120--Hb_000803_060 Hb_002793_060 Hb_002793_060 Hb_001489_120--Hb_002793_060 Hb_001489_120--Hb_006414_020 Hb_001258_150--Hb_000803_060 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_001258_150--Hb_011360_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9262 95.6482 36.0396 16.9508 6.85044 10.9181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.89756 1.43495 3.67087 10.3842 17.3063

CAGE analysis