Hb_002534_100

Information

Type -
Description -
Location Contig2534: 70885-73921
Sequence    

Annotation

kegg
ID rcu:RCOM_1471880
description malate dehydrogenase, putative (EC:1.1.1.37)
nr
ID XP_012080276.1
description PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
swissprot
ID Q9SN86
description Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1
trembl
ID A0A067K8E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11634 PE=3 SV=1
Gene Ontology
ID GO:0030060
description malate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26495: 70437-73852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_100 0.0 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
2 Hb_004712_210 0.0574597516 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
3 Hb_002303_020 0.0647743273 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
4 Hb_044653_040 0.0765166164 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
5 Hb_010578_080 0.0786630124 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
6 Hb_000292_100 0.0835195898 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
7 Hb_062226_130 0.0837051383 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
8 Hb_009296_070 0.0846124955 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
9 Hb_000347_250 0.0863026141 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
10 Hb_000221_190 0.088589718 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
11 Hb_000140_090 0.0892899823 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
12 Hb_002027_350 0.0904380034 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
13 Hb_012022_040 0.0905548846 - - Protein SIS1, putative [Ricinus communis]
14 Hb_163256_020 0.091392476 - - fructokinase [Manihot esculenta]
15 Hb_000505_130 0.0923040983 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
16 Hb_000270_310 0.0924780605 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
17 Hb_003669_020 0.0931578806 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
18 Hb_000310_020 0.0941029009 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
19 Hb_000580_020 0.096155637 - - unnamed protein product [Vitis vinifera]
20 Hb_000840_200 0.0975643207 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002534_100 Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_002534_100--Hb_004712_210 Hb_002303_020 Hb_002303_020 Hb_002534_100--Hb_002303_020 Hb_044653_040 Hb_044653_040 Hb_002534_100--Hb_044653_040 Hb_010578_080 Hb_010578_080 Hb_002534_100--Hb_010578_080 Hb_000292_100 Hb_000292_100 Hb_002534_100--Hb_000292_100 Hb_062226_130 Hb_062226_130 Hb_002534_100--Hb_062226_130 Hb_004712_210--Hb_002303_020 Hb_004712_210--Hb_010578_080 Hb_004712_210--Hb_044653_040 Hb_009296_070 Hb_009296_070 Hb_004712_210--Hb_009296_070 Hb_002173_070 Hb_002173_070 Hb_004712_210--Hb_002173_070 Hb_000840_200 Hb_000840_200 Hb_002303_020--Hb_000840_200 Hb_001728_040 Hb_001728_040 Hb_002303_020--Hb_001728_040 Hb_002303_020--Hb_044653_040 Hb_015675_040 Hb_015675_040 Hb_002303_020--Hb_015675_040 Hb_000505_130 Hb_000505_130 Hb_044653_040--Hb_000505_130 Hb_005843_140 Hb_005843_140 Hb_044653_040--Hb_005843_140 Hb_003669_020 Hb_003669_020 Hb_044653_040--Hb_003669_020 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_010578_080--Hb_062226_130 Hb_010578_080--Hb_009296_070 Hb_000392_420 Hb_000392_420 Hb_010578_080--Hb_000392_420 Hb_000365_230 Hb_000365_230 Hb_010578_080--Hb_000365_230 Hb_000347_250 Hb_000347_250 Hb_000292_100--Hb_000347_250 Hb_007254_020 Hb_007254_020 Hb_000292_100--Hb_007254_020 Hb_000230_400 Hb_000230_400 Hb_000292_100--Hb_000230_400 Hb_002435_100 Hb_002435_100 Hb_000292_100--Hb_002435_100 Hb_000029_060 Hb_000029_060 Hb_000292_100--Hb_000029_060 Hb_000086_420 Hb_000086_420 Hb_000292_100--Hb_000086_420 Hb_000738_020 Hb_000738_020 Hb_062226_130--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_062226_130--Hb_005162_090 Hb_062226_130--Hb_000365_230 Hb_164010_040 Hb_164010_040 Hb_062226_130--Hb_164010_040 Hb_003849_110 Hb_003849_110 Hb_062226_130--Hb_003849_110 Hb_003428_010 Hb_003428_010 Hb_062226_130--Hb_003428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6026 24.0955 28.9735 25.2972 12.2454 11.1279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4894 42.2477 21.1965 20.7573 26.8382

CAGE analysis