Hb_002534_110

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig2534: 74352-75493
Sequence    

Annotation

kegg
ID rcu:RCOM_1472000
description transcription factor, putative
nr
ID XP_002514752.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9M9U9
description Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1
trembl
ID B9RLY3
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1472000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_110 0.0 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
2 Hb_124480_010 0.091179032 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_000889_090 0.1024634682 - - isocitrate lyase, putative [Ricinus communis]
4 Hb_002289_020 0.1929939245 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_097730_010 0.2756594766 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
6 Hb_013272_010 0.3236747855 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000836_200 0.3462031501 - - -
8 Hb_048110_010 0.3690459151 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
9 Hb_108884_010 0.3789993034 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
10 Hb_163115_010 0.38651414 - - -
11 Hb_027014_010 0.3866701495 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_004162_300 0.3871108451 - - monovalent cation:proton antiporter, putative [Ricinus communis]
13 Hb_183366_010 0.3901035329 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_001809_040 0.3920565207 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
15 Hb_000599_060 0.3950809552 - - PREDICTED: legumin A-like [Jatropha curcas]
16 Hb_034050_010 0.3961874269 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
17 Hb_121031_010 0.3984710778 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
18 Hb_004532_010 0.4012322183 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
19 Hb_002135_040 0.4071617509 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
20 Hb_115784_010 0.4084319245 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_002534_110 Hb_002534_110 Hb_124480_010 Hb_124480_010 Hb_002534_110--Hb_124480_010 Hb_000889_090 Hb_000889_090 Hb_002534_110--Hb_000889_090 Hb_002289_020 Hb_002289_020 Hb_002534_110--Hb_002289_020 Hb_097730_010 Hb_097730_010 Hb_002534_110--Hb_097730_010 Hb_013272_010 Hb_013272_010 Hb_002534_110--Hb_013272_010 Hb_000836_200 Hb_000836_200 Hb_002534_110--Hb_000836_200 Hb_124480_010--Hb_002289_020 Hb_124480_010--Hb_000889_090 Hb_004162_300 Hb_004162_300 Hb_124480_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_124480_010--Hb_027014_010 Hb_034050_010 Hb_034050_010 Hb_124480_010--Hb_034050_010 Hb_000889_090--Hb_097730_010 Hb_000889_090--Hb_002289_020 Hb_000889_090--Hb_000836_200 Hb_000889_090--Hb_013272_010 Hb_048110_010 Hb_048110_010 Hb_002289_020--Hb_048110_010 Hb_000875_100 Hb_000875_100 Hb_002289_020--Hb_000875_100 Hb_001014_200 Hb_001014_200 Hb_002289_020--Hb_001014_200 Hb_097730_010--Hb_013272_010 Hb_010490_030 Hb_010490_030 Hb_097730_010--Hb_010490_030 Hb_004732_010 Hb_004732_010 Hb_097730_010--Hb_004732_010 Hb_097730_010--Hb_124480_010 Hb_013272_010--Hb_004732_010 Hb_013272_010--Hb_010490_030 Hb_013272_010--Hb_124480_010 Hb_032299_050 Hb_032299_050 Hb_000836_200--Hb_032299_050 Hb_000836_200--Hb_004732_010 Hb_001059_020 Hb_001059_020 Hb_000836_200--Hb_001059_020 Hb_006452_130 Hb_006452_130 Hb_000836_200--Hb_006452_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0721358 0 0 0 0.0805983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116267 0 0 0 0

CAGE analysis