Hb_002534_130

Information

Type -
Description -
Location Contig2534: 82884-87659
Sequence    

Annotation

kegg
ID rcu:RCOM_1472160
description membrane associated ring finger 1,8, putative
nr
ID XP_002514758.1
description membrane associated ring finger 1,8, putative [Ricinus communis]
swissprot
ID F4JKK0
description Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1
trembl
ID B9RLY9
description Membrane associated ring finger 1,8, putative OS=Ricinus communis GN=RCOM_1472160 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring fyve phd zinc finger superfamily protein isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26497: 82979-87656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_130 0.0 - - membrane associated ring finger 1,8, putative [Ricinus communis]
2 Hb_002693_030 0.0827480966 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
3 Hb_005686_130 0.0827696416 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
4 Hb_000193_260 0.0876113371 - - PREDICTED: protein NEN1 [Jatropha curcas]
5 Hb_001269_620 0.0889897692 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
6 Hb_015778_040 0.092878855 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
7 Hb_001277_050 0.1036022351 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
8 Hb_006438_020 0.1070497308 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
9 Hb_061256_010 0.1080519778 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
10 Hb_026198_010 0.1084281911 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
11 Hb_001147_050 0.1097957667 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
12 Hb_000330_090 0.1105042878 - - ornithine carbamoyltransferase, putative [Ricinus communis]
13 Hb_006637_030 0.1131737409 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
14 Hb_001817_100 0.1132189829 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
15 Hb_004994_180 0.1132894155 - - malic enzyme, putative [Ricinus communis]
16 Hb_027506_040 0.1136772898 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
17 Hb_000589_170 0.1141888157 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
18 Hb_002232_430 0.1144780973 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
19 Hb_000638_130 0.1160382419 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
20 Hb_002486_080 0.1165337357 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002534_130 Hb_002534_130 Hb_002693_030 Hb_002693_030 Hb_002534_130--Hb_002693_030 Hb_005686_130 Hb_005686_130 Hb_002534_130--Hb_005686_130 Hb_000193_260 Hb_000193_260 Hb_002534_130--Hb_000193_260 Hb_001269_620 Hb_001269_620 Hb_002534_130--Hb_001269_620 Hb_015778_040 Hb_015778_040 Hb_002534_130--Hb_015778_040 Hb_001277_050 Hb_001277_050 Hb_002534_130--Hb_001277_050 Hb_006637_030 Hb_006637_030 Hb_002693_030--Hb_006637_030 Hb_007850_030 Hb_007850_030 Hb_002693_030--Hb_007850_030 Hb_000330_090 Hb_000330_090 Hb_002693_030--Hb_000330_090 Hb_053709_050 Hb_053709_050 Hb_002693_030--Hb_053709_050 Hb_026198_010 Hb_026198_010 Hb_002693_030--Hb_026198_010 Hb_005686_130--Hb_001269_620 Hb_000638_130 Hb_000638_130 Hb_005686_130--Hb_000638_130 Hb_005686_130--Hb_001277_050 Hb_000510_170 Hb_000510_170 Hb_005686_130--Hb_000510_170 Hb_000088_260 Hb_000088_260 Hb_005686_130--Hb_000088_260 Hb_061256_010 Hb_061256_010 Hb_000193_260--Hb_061256_010 Hb_000193_260--Hb_026198_010 Hb_000009_520 Hb_000009_520 Hb_000193_260--Hb_000009_520 Hb_000193_260--Hb_002693_030 Hb_001147_050 Hb_001147_050 Hb_000193_260--Hb_001147_050 Hb_001269_620--Hb_001277_050 Hb_001269_620--Hb_000088_260 Hb_049575_010 Hb_049575_010 Hb_001269_620--Hb_049575_010 Hb_001269_620--Hb_001147_050 Hb_000235_070 Hb_000235_070 Hb_001269_620--Hb_000235_070 Hb_000589_170 Hb_000589_170 Hb_015778_040--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_015778_040--Hb_001155_050 Hb_001729_020 Hb_001729_020 Hb_015778_040--Hb_001729_020 Hb_002686_150 Hb_002686_150 Hb_015778_040--Hb_002686_150 Hb_000098_180 Hb_000098_180 Hb_015778_040--Hb_000098_180 Hb_001277_050--Hb_001147_050 Hb_001277_050--Hb_000088_260 Hb_001277_050--Hb_000638_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04511 20.4722 45.7661 35.6075 3.22108 7.21463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7391 18.1761 16.6648 25.672 24.2059

CAGE analysis