Hb_002539_030

Information

Type -
Description -
Location Contig2539: 22994-25328
Sequence    

Annotation

kegg
ID rcu:RCOM_1620780
description hypothetical protein
nr
ID XP_012068350.1
description PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15716 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_030 0.0 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
2 Hb_000032_190 0.2041569147 - - -
3 Hb_076223_020 0.2272923855 - - -
4 Hb_012019_040 0.2866387761 - - -
5 Hb_001878_020 0.2909512778 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
6 Hb_002982_030 0.2976545847 - - Chalcone synthase, putative [Ricinus communis]
7 Hb_008725_160 0.2996970333 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000540_210 0.3012981615 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002631_090 0.3146516093 - - -
10 Hb_008406_080 0.3201316581 - - Nonspecific lipid-transfer protein 3 precursor, putative [Ricinus communis]
11 Hb_008651_010 0.3227205855 - - cytochrome P450, putative [Ricinus communis]
12 Hb_005348_090 0.3228575574 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
13 Hb_005686_070 0.3260200554 - - hypothetical protein RCOM_1078540 [Ricinus communis]
14 Hb_003787_050 0.3291365937 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001277_200 0.330474904 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_000521_190 0.3332544757 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
17 Hb_109515_010 0.3358158058 - - -
18 Hb_187620_010 0.3398806942 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
19 Hb_004899_010 0.3430802703 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
20 Hb_112703_010 0.3436860512 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]

Gene co-expression network

sample Hb_002539_030 Hb_002539_030 Hb_000032_190 Hb_000032_190 Hb_002539_030--Hb_000032_190 Hb_076223_020 Hb_076223_020 Hb_002539_030--Hb_076223_020 Hb_012019_040 Hb_012019_040 Hb_002539_030--Hb_012019_040 Hb_001878_020 Hb_001878_020 Hb_002539_030--Hb_001878_020 Hb_002982_030 Hb_002982_030 Hb_002539_030--Hb_002982_030 Hb_008725_160 Hb_008725_160 Hb_002539_030--Hb_008725_160 Hb_187620_010 Hb_187620_010 Hb_000032_190--Hb_187620_010 Hb_009683_050 Hb_009683_050 Hb_000032_190--Hb_009683_050 Hb_000092_160 Hb_000092_160 Hb_000032_190--Hb_000092_160 Hb_000656_180 Hb_000656_180 Hb_000032_190--Hb_000656_180 Hb_005248_020 Hb_005248_020 Hb_000032_190--Hb_005248_020 Hb_076223_020--Hb_012019_040 Hb_004204_180 Hb_004204_180 Hb_076223_020--Hb_004204_180 Hb_002539_060 Hb_002539_060 Hb_076223_020--Hb_002539_060 Hb_003687_260 Hb_003687_260 Hb_076223_020--Hb_003687_260 Hb_049719_010 Hb_049719_010 Hb_076223_020--Hb_049719_010 Hb_012019_040--Hb_004204_180 Hb_012019_040--Hb_008725_160 Hb_004117_250 Hb_004117_250 Hb_012019_040--Hb_004117_250 Hb_001277_200 Hb_001277_200 Hb_012019_040--Hb_001277_200 Hb_001242_180 Hb_001242_180 Hb_001878_020--Hb_001242_180 Hb_000454_080 Hb_000454_080 Hb_001878_020--Hb_000454_080 Hb_005348_090 Hb_005348_090 Hb_001878_020--Hb_005348_090 Hb_002400_020 Hb_002400_020 Hb_001878_020--Hb_002400_020 Hb_002311_160 Hb_002311_160 Hb_001878_020--Hb_002311_160 Hb_124677_020 Hb_124677_020 Hb_001878_020--Hb_124677_020 Hb_007894_020 Hb_007894_020 Hb_002982_030--Hb_007894_020 Hb_008406_080 Hb_008406_080 Hb_002982_030--Hb_008406_080 Hb_022137_020 Hb_022137_020 Hb_002982_030--Hb_022137_020 Hb_101058_020 Hb_101058_020 Hb_002982_030--Hb_101058_020 Hb_009692_030 Hb_009692_030 Hb_002982_030--Hb_009692_030 Hb_002007_070 Hb_002007_070 Hb_002982_030--Hb_002007_070 Hb_001205_010 Hb_001205_010 Hb_008725_160--Hb_001205_010 Hb_000313_020 Hb_000313_020 Hb_008725_160--Hb_000313_020 Hb_005686_070 Hb_005686_070 Hb_008725_160--Hb_005686_070 Hb_008725_160--Hb_076223_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0575656 0.0619912 0.0127731 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0359468 0 0 0 0

CAGE analysis