Hb_002539_090

Information

Type -
Description -
Location Contig2539: 91458-93729
Sequence    

Annotation

kegg
ID cmo:103489178
description uncharacterized LOC103489178
nr
ID XP_008446430.1
description PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A0A0KQU2
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606640 PE=4 SV=1
Gene Ontology
ID GO:0043189
description PREDICTED: uncharacterized protein LOC103489178

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26513: 91524-93696 , PASA_asmbl_26514: 91521-93696
cDNA
(Sanger)
(ID:Location)		 004_O01.ab1: 91521-93638 , 041_P14.ab1: 91521-93612

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_090 0.0 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
2 Hb_001258_080 0.0721954437 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
3 Hb_000751_130 0.0744751765 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
4 Hb_001173_040 0.0779014351 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_007594_090 0.0805516302 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
6 Hb_001357_080 0.087428953 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
7 Hb_000172_030 0.0892284952 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
8 Hb_010812_010 0.0893371491 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
9 Hb_001829_060 0.0911000909 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_000046_110 0.0943747352 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
11 Hb_000787_140 0.0980587896 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
12 Hb_001862_100 0.0990954907 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
13 Hb_000199_070 0.0994854892 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001437_230 0.1001315512 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
15 Hb_002028_130 0.1043011665 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
16 Hb_007317_060 0.1056709054 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
17 Hb_130291_010 0.1075773304 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
18 Hb_011161_050 0.1081917065 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
19 Hb_000024_030 0.1086553311 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
20 Hb_180301_010 0.1093788028 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002539_090 Hb_002539_090 Hb_001258_080 Hb_001258_080 Hb_002539_090--Hb_001258_080 Hb_000751_130 Hb_000751_130 Hb_002539_090--Hb_000751_130 Hb_001173_040 Hb_001173_040 Hb_002539_090--Hb_001173_040 Hb_007594_090 Hb_007594_090 Hb_002539_090--Hb_007594_090 Hb_001357_080 Hb_001357_080 Hb_002539_090--Hb_001357_080 Hb_000172_030 Hb_000172_030 Hb_002539_090--Hb_000172_030 Hb_000046_110 Hb_000046_110 Hb_001258_080--Hb_000046_110 Hb_001811_020 Hb_001811_020 Hb_001258_080--Hb_001811_020 Hb_001718_100 Hb_001718_100 Hb_001258_080--Hb_001718_100 Hb_001258_080--Hb_001173_040 Hb_001829_060 Hb_001829_060 Hb_001258_080--Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000751_130--Hb_004032_100 Hb_000751_130--Hb_000046_110 Hb_000751_130--Hb_000172_030 Hb_002028_130 Hb_002028_130 Hb_001173_040--Hb_002028_130 Hb_001173_040--Hb_000172_030 Hb_001173_040--Hb_000751_130 Hb_001008_010 Hb_001008_010 Hb_001173_040--Hb_001008_010 Hb_000672_120 Hb_000672_120 Hb_007594_090--Hb_000672_120 Hb_000975_110 Hb_000975_110 Hb_007594_090--Hb_000975_110 Hb_004336_050 Hb_004336_050 Hb_007594_090--Hb_004336_050 Hb_007594_090--Hb_000751_130 Hb_003561_030 Hb_003561_030 Hb_007594_090--Hb_003561_030 Hb_001357_080--Hb_000046_110 Hb_010436_060 Hb_010436_060 Hb_001357_080--Hb_010436_060 Hb_001357_080--Hb_000751_130 Hb_006641_010 Hb_006641_010 Hb_001357_080--Hb_006641_010 Hb_029866_070 Hb_029866_070 Hb_001357_080--Hb_029866_070 Hb_000787_140 Hb_000787_140 Hb_000172_030--Hb_000787_140 Hb_000172_030--Hb_000087_020 Hb_180301_010 Hb_180301_010 Hb_000172_030--Hb_180301_010 Hb_008544_010 Hb_008544_010 Hb_000172_030--Hb_008544_010 Hb_001437_230 Hb_001437_230 Hb_000172_030--Hb_001437_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95169 1.13762 1.37159 5.83702 6.99757 18.2787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0689 23.7339 17.7972 4.89075 2.72947

CAGE analysis