Hb_002539_110

Information

Type -
Description -
Location Contig2539: 100507-106314
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09440g
description hypothetical protein
nr
ID KDP41290.1
description hypothetical protein JCGZ_15697 [Jatropha curcas]
swissprot
ID Q3EC77
description Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2
trembl
ID A0A067L9X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15697 PE=4 SV=1
Gene Ontology
ID GO:0008168
description quasimodo2 like 2 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26515: 102822-103140 , PASA_asmbl_26516: 105622-105948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_110 0.0 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
2 Hb_012215_010 0.0533426114 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
3 Hb_010272_010 0.0581294822 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
4 Hb_000362_170 0.0627563123 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
5 Hb_005895_010 0.0641104836 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
6 Hb_162275_040 0.0689405638 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013726_080 0.0704555149 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
8 Hb_005227_010 0.0708364585 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
9 Hb_171334_010 0.0728617895 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
10 Hb_000640_070 0.0756473029 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
11 Hb_005946_210 0.0767390594 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
12 Hb_003104_040 0.0773532875 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
13 Hb_007800_020 0.0811523324 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
14 Hb_000086_440 0.0813654372 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
15 Hb_001005_030 0.0823054744 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
16 Hb_000664_110 0.0826162569 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
17 Hb_002014_040 0.0845699666 - - site-1 protease, putative [Ricinus communis]
18 Hb_017295_010 0.0862702269 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
19 Hb_073973_150 0.0862927421 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
20 Hb_002784_030 0.0876761531 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]

Gene co-expression network

sample Hb_002539_110 Hb_002539_110 Hb_012215_010 Hb_012215_010 Hb_002539_110--Hb_012215_010 Hb_010272_010 Hb_010272_010 Hb_002539_110--Hb_010272_010 Hb_000362_170 Hb_000362_170 Hb_002539_110--Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_002539_110--Hb_005895_010 Hb_162275_040 Hb_162275_040 Hb_002539_110--Hb_162275_040 Hb_013726_080 Hb_013726_080 Hb_002539_110--Hb_013726_080 Hb_012215_010--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_012215_010--Hb_000640_070 Hb_012215_010--Hb_000362_170 Hb_000664_110 Hb_000664_110 Hb_012215_010--Hb_000664_110 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_005946_210 Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_010272_010--Hb_000640_070 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040 Hb_000362_170--Hb_005895_010 Hb_000362_170--Hb_002014_040 Hb_000362_170--Hb_001005_030 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_005895_010--Hb_002014_040 Hb_005895_010--Hb_001002_060 Hb_005895_010--Hb_000640_070 Hb_000086_440 Hb_000086_440 Hb_162275_040--Hb_000086_440 Hb_001109_060 Hb_001109_060 Hb_162275_040--Hb_001109_060 Hb_162275_040--Hb_010272_010 Hb_005227_010 Hb_005227_010 Hb_162275_040--Hb_005227_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020 Hb_001486_170 Hb_001486_170 Hb_013726_080--Hb_001486_170 Hb_000915_080 Hb_000915_080 Hb_013726_080--Hb_000915_080 Hb_005463_130 Hb_005463_130 Hb_013726_080--Hb_005463_130 Hb_002054_050 Hb_002054_050 Hb_013726_080--Hb_002054_050 Hb_003430_090 Hb_003430_090 Hb_013726_080--Hb_003430_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7862 11.5542 17.1065 18.3378 18.7134 15.4096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.77976 5.18659 8.52617 9.09203 16.101

CAGE analysis