Hb_002540_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2540: 53069-58571
Sequence    

Annotation

kegg
ID tcc:TCM_024828
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
nr
ID XP_012073030.1
description PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
swissprot
ID Q3EAI1
description Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1
trembl
ID A0A067KM93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06815 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26551: 53081-58440 , PASA_asmbl_26552: 54543-55984 , PASA_asmbl_26553: 56925-58617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002540_060 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
2 Hb_000028_150 0.1040999288 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
3 Hb_001343_120 0.1227942257 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000110_240 0.1342376696 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
5 Hb_000207_140 0.1380959048 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
6 Hb_007479_010 0.1456884164 - - Root phototropism protein, putative [Ricinus communis]
7 Hb_002435_090 0.1477259963 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_002843_130 0.147918374 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
9 Hb_000500_330 0.1514257023 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
10 Hb_000768_120 0.1515431352 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
11 Hb_027654_070 0.1540408744 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000494_010 0.1610716088 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
13 Hb_000483_270 0.1616135994 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
14 Hb_185494_010 0.1617801245 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_000574_380 0.1640371737 - - hydrolase, putative [Ricinus communis]
16 Hb_002986_140 0.1644276215 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
17 Hb_001442_050 0.1647555204 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
18 Hb_004218_050 0.1647930003 - - annexin [Manihot esculenta]
19 Hb_007952_050 0.1651133816 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
20 Hb_004855_070 0.1676337303 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]

Gene co-expression network

sample Hb_002540_060 Hb_002540_060 Hb_000028_150 Hb_000028_150 Hb_002540_060--Hb_000028_150 Hb_001343_120 Hb_001343_120 Hb_002540_060--Hb_001343_120 Hb_000110_240 Hb_000110_240 Hb_002540_060--Hb_000110_240 Hb_000207_140 Hb_000207_140 Hb_002540_060--Hb_000207_140 Hb_007479_010 Hb_007479_010 Hb_002540_060--Hb_007479_010 Hb_002435_090 Hb_002435_090 Hb_002540_060--Hb_002435_090 Hb_002986_140 Hb_002986_140 Hb_000028_150--Hb_002986_140 Hb_000028_150--Hb_001343_120 Hb_000028_150--Hb_002435_090 Hb_001442_050 Hb_001442_050 Hb_000028_150--Hb_001442_050 Hb_000500_330 Hb_000500_330 Hb_000028_150--Hb_000500_330 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_001343_120--Hb_001975_050 Hb_001343_120--Hb_000207_140 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_000494_010 Hb_000494_010 Hb_000110_240--Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_000110_240--Hb_005116_130 Hb_000110_240--Hb_000500_330 Hb_046590_010 Hb_046590_010 Hb_000110_240--Hb_046590_010 Hb_001579_190 Hb_001579_190 Hb_000110_240--Hb_001579_190 Hb_000110_240--Hb_001442_050 Hb_000207_140--Hb_002435_090 Hb_188739_010 Hb_188739_010 Hb_000207_140--Hb_188739_010 Hb_003992_050 Hb_003992_050 Hb_000207_140--Hb_003992_050 Hb_000816_210 Hb_000816_210 Hb_000207_140--Hb_000816_210 Hb_000207_140--Hb_001975_050 Hb_000768_120 Hb_000768_120 Hb_007479_010--Hb_000768_120 Hb_002495_090 Hb_002495_090 Hb_007479_010--Hb_002495_090 Hb_000134_040 Hb_000134_040 Hb_007479_010--Hb_000134_040 Hb_004855_070 Hb_004855_070 Hb_007479_010--Hb_004855_070 Hb_006681_020 Hb_006681_020 Hb_007479_010--Hb_006681_020 Hb_000932_110 Hb_000932_110 Hb_007479_010--Hb_000932_110 Hb_002435_090--Hb_188739_010 Hb_002435_090--Hb_003992_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47317 2.22619 78.0525 11.3529 3.97116 1.37954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.792847 1.38847 0.912865 2.60485 27.3331

CAGE analysis