Hb_002540_070

Information

Type -
Description -
Location Contig2540: 99567-103701
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05610g
description hypothetical protein
nr
ID XP_012073032.1
description PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
swissprot
ID Q9C7D7
description Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1
trembl
ID U5G5M1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05610g PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein cornichon homolog 1-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26558: 99540-103463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002540_070 0.0 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
2 Hb_007123_080 0.1226058393 - - big map kinase/bmk, putative [Ricinus communis]
3 Hb_000563_440 0.1233955123 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
4 Hb_000890_020 0.1328677815 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
5 Hb_002235_380 0.136927572 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
6 Hb_000181_270 0.1391120955 - - ATP binding protein, putative [Ricinus communis]
7 Hb_002400_050 0.1481033682 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
8 Hb_000529_040 0.1509756451 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
9 Hb_038044_010 0.1572256094 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
10 Hb_007545_110 0.1586656484 - - catalytic, putative [Ricinus communis]
11 Hb_000288_090 0.1586918048 - - unnamed protein product [Vitis vinifera]
12 Hb_008173_060 0.15909068 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
13 Hb_001155_050 0.1654106974 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
14 Hb_000098_150 0.1671479413 - - DNA helicase hus2, putative [Ricinus communis]
15 Hb_007426_220 0.1697589503 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
16 Hb_005901_030 0.1699009613 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
17 Hb_011485_030 0.1700089085 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
18 Hb_001780_080 0.1703366525 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
19 Hb_006970_130 0.1706842264 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
20 Hb_000088_240 0.1709867293 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002540_070 Hb_002540_070 Hb_007123_080 Hb_007123_080 Hb_002540_070--Hb_007123_080 Hb_000563_440 Hb_000563_440 Hb_002540_070--Hb_000563_440 Hb_000890_020 Hb_000890_020 Hb_002540_070--Hb_000890_020 Hb_002235_380 Hb_002235_380 Hb_002540_070--Hb_002235_380 Hb_000181_270 Hb_000181_270 Hb_002540_070--Hb_000181_270 Hb_002400_050 Hb_002400_050 Hb_002540_070--Hb_002400_050 Hb_007576_140 Hb_007576_140 Hb_007123_080--Hb_007576_140 Hb_005527_060 Hb_005527_060 Hb_007123_080--Hb_005527_060 Hb_004517_030 Hb_004517_030 Hb_007123_080--Hb_004517_030 Hb_002942_120 Hb_002942_120 Hb_007123_080--Hb_002942_120 Hb_000032_200 Hb_000032_200 Hb_007123_080--Hb_000032_200 Hb_000684_120 Hb_000684_120 Hb_000563_440--Hb_000684_120 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_005271_140 Hb_005271_140 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_004920_050 Hb_004920_050 Hb_000890_020--Hb_004920_050 Hb_000890_020--Hb_002400_050 Hb_000086_180 Hb_000086_180 Hb_000890_020--Hb_000086_180 Hb_000008_390 Hb_000008_390 Hb_000890_020--Hb_000008_390 Hb_000890_020--Hb_000181_270 Hb_002235_380--Hb_000684_120 Hb_002960_090 Hb_002960_090 Hb_002235_380--Hb_002960_090 Hb_002235_380--Hb_001863_160 Hb_001155_050 Hb_001155_050 Hb_002235_380--Hb_001155_050 Hb_011485_030 Hb_011485_030 Hb_000181_270--Hb_011485_030 Hb_000181_270--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_000181_270--Hb_000288_090 Hb_002518_200 Hb_002518_200 Hb_000181_270--Hb_002518_200 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040 Hb_000134_030 Hb_000134_030 Hb_002400_050--Hb_000134_030 Hb_000260_610 Hb_000260_610 Hb_002400_050--Hb_000260_610 Hb_007545_110 Hb_007545_110 Hb_002400_050--Hb_007545_110 Hb_002400_050--Hb_002518_200 Hb_002400_050--Hb_000181_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49912 5.35692 31.0304 10.0562 0.722397 2.62922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98987 3.99087 1.36966 7.78577 3.52561

CAGE analysis