Hb_002540_080

Information

Type -
Description -
Location Contig2540: 105706-111834
Sequence    

Annotation

kegg
ID rcu:RCOM_0246510
description cysteine-type peptidase, putative
nr
ID XP_002534273.1
description cysteine-type peptidase, putative [Ricinus communis]
swissprot
ID Q8LBZ4
description OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1
trembl
ID B9T7Q4
description Cysteine-type peptidase, putative OS=Ricinus communis GN=RCOM_0246510 PE=4 SV=1
Gene Ontology
ID GO:0008233
description otu domain-containing protein at3g57810

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26559: 105972-111835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002540_080 0.0 - - cysteine-type peptidase, putative [Ricinus communis]
2 Hb_003622_030 0.0687399304 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
3 Hb_000676_390 0.0783784718 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
4 Hb_026889_030 0.0797636821 - - protein with unknown function [Ricinus communis]
5 Hb_012799_170 0.0809493342 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
6 Hb_000160_180 0.0857220894 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
7 Hb_001318_260 0.0865170933 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
8 Hb_001279_080 0.0880647301 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
9 Hb_004889_020 0.0881580953 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
10 Hb_018133_020 0.0908455687 - - transporter, putative [Ricinus communis]
11 Hb_002872_050 0.0922113758 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
12 Hb_002871_190 0.0929626843 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
13 Hb_004157_020 0.0939001514 - - PREDICTED: histone H2B-like [Gossypium raimondii]
14 Hb_000566_120 0.0939718267 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
15 Hb_000431_070 0.0939770516 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
16 Hb_001329_150 0.0948296426 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
17 Hb_000329_200 0.0950351976 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
18 Hb_010361_010 0.0958509834 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
19 Hb_000174_030 0.0966162337 - - hypothetical protein RCOM_1077370 [Ricinus communis]
20 Hb_131181_010 0.0967553012 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_002540_080 Hb_002540_080 Hb_003622_030 Hb_003622_030 Hb_002540_080--Hb_003622_030 Hb_000676_390 Hb_000676_390 Hb_002540_080--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_002540_080--Hb_026889_030 Hb_012799_170 Hb_012799_170 Hb_002540_080--Hb_012799_170 Hb_000160_180 Hb_000160_180 Hb_002540_080--Hb_000160_180 Hb_001318_260 Hb_001318_260 Hb_002540_080--Hb_001318_260 Hb_003622_030--Hb_012799_170 Hb_014720_110 Hb_014720_110 Hb_003622_030--Hb_014720_110 Hb_000566_120 Hb_000566_120 Hb_003622_030--Hb_000566_120 Hb_002968_040 Hb_002968_040 Hb_003622_030--Hb_002968_040 Hb_011457_050 Hb_011457_050 Hb_003622_030--Hb_011457_050 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_008071_020 Hb_008071_020 Hb_000676_390--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_000676_390--Hb_004889_020 Hb_000676_390--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_000676_390--Hb_001931_010 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_026889_030--Hb_004889_020 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050 Hb_005167_010 Hb_005167_010 Hb_012799_170--Hb_005167_010 Hb_012799_170--Hb_000566_120 Hb_001322_110 Hb_001322_110 Hb_012799_170--Hb_001322_110 Hb_001195_060 Hb_001195_060 Hb_012799_170--Hb_001195_060 Hb_131181_010 Hb_131181_010 Hb_000160_180--Hb_131181_010 Hb_000160_180--Hb_001318_260 Hb_018133_020 Hb_018133_020 Hb_000160_180--Hb_018133_020 Hb_001279_080 Hb_001279_080 Hb_000160_180--Hb_001279_080 Hb_026053_020 Hb_026053_020 Hb_000160_180--Hb_026053_020 Hb_001318_260--Hb_018133_020 Hb_001318_260--Hb_131181_010 Hb_001318_260--Hb_001279_080 Hb_002872_050 Hb_002872_050 Hb_001318_260--Hb_002872_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15616 2.21597 15.0052 8.55967 5.41121 6.79974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9528 21.1762 11.9518 7.08947 11.0078

CAGE analysis