Hb_002542_020

Information

Type -
Description -
Location Contig2542: 25421-30460
Sequence    

Annotation

kegg
ID rcu:RCOM_0632140
description hypothetical protein
nr
ID XP_012072119.1
description PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04630 PE=4 SV=1
Gene Ontology
ID GO:0005576
description PREDICTED: uncharacterized protein LOC105634003 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26566: 25401-30472
cDNA
(Sanger)
(ID:Location)		 030_B15.ab1: 25406-30011 , 052_N12.ab1: 25406-29635

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_020 0.0 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
2 Hb_000808_050 0.0802731373 - - exonuclease, putative [Ricinus communis]
3 Hb_000599_180 0.0865341937 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000141_250 0.0933787831 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
5 Hb_000442_150 0.0993291531 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
6 Hb_008511_130 0.101720846 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
7 Hb_002078_020 0.1025586583 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
8 Hb_007904_160 0.103710612 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
9 Hb_021409_180 0.1047948973 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
10 Hb_000050_190 0.1051429688 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001584_140 0.1055553819 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
12 Hb_000230_560 0.1057694233 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
13 Hb_002997_080 0.106322682 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
14 Hb_000390_170 0.1070452771 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
15 Hb_000083_250 0.1078882964 - - ring finger protein, putative [Ricinus communis]
16 Hb_023344_120 0.1108594524 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
17 Hb_002946_160 0.111064871 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
18 Hb_002942_060 0.11144483 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_005488_020 0.1118584888 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
20 Hb_008120_030 0.112054682 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]

Gene co-expression network

sample Hb_002542_020 Hb_002542_020 Hb_000808_050 Hb_000808_050 Hb_002542_020--Hb_000808_050 Hb_000599_180 Hb_000599_180 Hb_002542_020--Hb_000599_180 Hb_000141_250 Hb_000141_250 Hb_002542_020--Hb_000141_250 Hb_000442_150 Hb_000442_150 Hb_002542_020--Hb_000442_150 Hb_008511_130 Hb_008511_130 Hb_002542_020--Hb_008511_130 Hb_002078_020 Hb_002078_020 Hb_002542_020--Hb_002078_020 Hb_000808_050--Hb_000141_250 Hb_000808_050--Hb_008511_130 Hb_000808_050--Hb_000599_180 Hb_006817_010 Hb_006817_010 Hb_000808_050--Hb_006817_010 Hb_001472_060 Hb_001472_060 Hb_000808_050--Hb_001472_060 Hb_001001_080 Hb_001001_080 Hb_000599_180--Hb_001001_080 Hb_000050_190 Hb_000050_190 Hb_000599_180--Hb_000050_190 Hb_021409_180 Hb_021409_180 Hb_000599_180--Hb_021409_180 Hb_000340_420 Hb_000340_420 Hb_000599_180--Hb_000340_420 Hb_000141_250--Hb_008511_130 Hb_000230_560 Hb_000230_560 Hb_000141_250--Hb_000230_560 Hb_005288_150 Hb_005288_150 Hb_000141_250--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000141_250--Hb_002997_080 Hb_000390_170 Hb_000390_170 Hb_000141_250--Hb_000390_170 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020 Hb_008246_040 Hb_008246_040 Hb_000442_150--Hb_008246_040 Hb_002671_140 Hb_002671_140 Hb_000442_150--Hb_002671_140 Hb_000982_060 Hb_000982_060 Hb_000442_150--Hb_000982_060 Hb_057878_010 Hb_057878_010 Hb_000442_150--Hb_057878_010 Hb_001135_130 Hb_001135_130 Hb_000442_150--Hb_001135_130 Hb_003893_030 Hb_003893_030 Hb_000442_150--Hb_003893_030 Hb_008511_130--Hb_002997_080 Hb_008511_130--Hb_000230_560 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_000523_050 Hb_000523_050 Hb_002078_020--Hb_000523_050 Hb_000853_230 Hb_000853_230 Hb_002078_020--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_002078_020--Hb_001926_030 Hb_004055_150 Hb_004055_150 Hb_002078_020--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_002078_020--Hb_006620_020 Hb_001493_030 Hb_001493_030 Hb_002078_020--Hb_001493_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.7326 22.1979 45.6295 50.3212 42.0608 46.1192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.9726 26.2238 48.7556 32.5277 30.6708

CAGE analysis