Hb_002542_030

Information

Type transcription factor
Description TF Family: Tify
Location Contig2542: 36435-36863
Sequence    

Annotation

kegg
ID rcu:RCOM_0631830
description hypothetical protein
nr
ID AIY25008.1
description JAZ7 [Hevea brasiliensis]
swissprot
ID Q8LBM2
description Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1
trembl
ID A0A0B4RUQ7
description JAZ7 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26567: 36406-36670 , PASA_asmbl_26568: 36798-36899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_030 0.0 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
2 Hb_000164_160 0.080033294 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
3 Hb_005054_330 0.0926640673 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
4 Hb_008637_020 0.0945983438 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003207_230 0.0987214993 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
6 Hb_099188_010 0.1018118114 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_124953_010 0.1031096037 - - hypothetical protein RCOM_1314600 [Ricinus communis]
8 Hb_000627_130 0.1122935562 - - Polcalcin Jun o, putative [Ricinus communis]
9 Hb_000032_150 0.1124519781 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
10 Hb_167186_010 0.1131786425 - - cation-transporting atpase plant, putative [Ricinus communis]
11 Hb_002548_030 0.113194536 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
12 Hb_128851_020 0.1133620594 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000359_230 0.1138143623 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
14 Hb_000808_090 0.1146059999 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
15 Hb_007858_020 0.1148176012 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
16 Hb_110356_010 0.1156390695 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
17 Hb_034642_010 0.11569006 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
18 Hb_022137_020 0.1165396525 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
19 Hb_034581_010 0.1175554282 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
20 Hb_001677_140 0.1240323571 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_002542_030 Hb_002542_030 Hb_000164_160 Hb_000164_160 Hb_002542_030--Hb_000164_160 Hb_005054_330 Hb_005054_330 Hb_002542_030--Hb_005054_330 Hb_008637_020 Hb_008637_020 Hb_002542_030--Hb_008637_020 Hb_003207_230 Hb_003207_230 Hb_002542_030--Hb_003207_230 Hb_099188_010 Hb_099188_010 Hb_002542_030--Hb_099188_010 Hb_124953_010 Hb_124953_010 Hb_002542_030--Hb_124953_010 Hb_000164_160--Hb_005054_330 Hb_004899_010 Hb_004899_010 Hb_000164_160--Hb_004899_010 Hb_002289_180 Hb_002289_180 Hb_000164_160--Hb_002289_180 Hb_000627_130 Hb_000627_130 Hb_000164_160--Hb_000627_130 Hb_000164_160--Hb_008637_020 Hb_007858_020 Hb_007858_020 Hb_005054_330--Hb_007858_020 Hb_167186_010 Hb_167186_010 Hb_005054_330--Hb_167186_010 Hb_000959_240 Hb_000959_240 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_005054_330--Hb_003207_230 Hb_128851_020 Hb_128851_020 Hb_008637_020--Hb_128851_020 Hb_008637_020--Hb_099188_010 Hb_008637_020--Hb_002289_180 Hb_164577_010 Hb_164577_010 Hb_008637_020--Hb_164577_010 Hb_001511_200 Hb_001511_200 Hb_008637_020--Hb_001511_200 Hb_003207_230--Hb_124953_010 Hb_000032_150 Hb_000032_150 Hb_003207_230--Hb_000032_150 Hb_003207_230--Hb_099188_010 Hb_047955_010 Hb_047955_010 Hb_003207_230--Hb_047955_010 Hb_000359_230 Hb_000359_230 Hb_003207_230--Hb_000359_230 Hb_002548_030 Hb_002548_030 Hb_099188_010--Hb_002548_030 Hb_099188_010--Hb_128851_020 Hb_099188_010--Hb_000359_230 Hb_110356_010 Hb_110356_010 Hb_099188_010--Hb_110356_010 Hb_001677_140 Hb_001677_140 Hb_099188_010--Hb_001677_140 Hb_034581_010 Hb_034581_010 Hb_099188_010--Hb_034581_010 Hb_124953_010--Hb_000032_150 Hb_124953_010--Hb_007858_020 Hb_124953_010--Hb_005054_330 Hb_124953_010--Hb_047955_010 Hb_004032_220 Hb_004032_220 Hb_124953_010--Hb_004032_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169998 143.593 88.2888 41.7694 0 0.182736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174842 3.1586 0 1.04653 0.987163

CAGE analysis