Hb_002542_090

Information

Type -
Description -
Location Contig2542: 103258-107834
Sequence    

Annotation

kegg
ID rcu:RCOM_0618610
description Potassium transporter, putative
nr
ID XP_002528844.1
description Potassium transporter, putative [Ricinus communis]
swissprot
ID Q5JK32
description Potassium transporter 5 OS=Oryza sativa subsp. japonica GN=HAK5 PE=2 SV=2
trembl
ID B9SS75
description Potassium transporter OS=Ricinus communis GN=RCOM_0618610 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_090 0.0 - - Potassium transporter, putative [Ricinus communis]
2 Hb_006938_010 0.1068881571 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
3 Hb_005010_040 0.1104898465 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
4 Hb_002928_220 0.1154867008 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_001331_040 0.1158740139 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
6 Hb_000010_200 0.1230419854 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_001856_060 0.1231132286 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_000381_030 0.1248714294 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
9 Hb_006569_110 0.1291944709 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006949_030 0.1315330441 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_000254_040 0.1330187924 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
12 Hb_007894_260 0.1356671889 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_000101_360 0.1367574022 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
14 Hb_001013_040 0.1377948673 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
15 Hb_008080_050 0.1389466006 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_005116_010 0.1449040244 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
17 Hb_000254_150 0.1555246565 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
18 Hb_114025_010 0.156488354 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
19 Hb_003060_080 0.1570043626 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
20 Hb_002686_390 0.1576251474 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]

Gene co-expression network

sample Hb_002542_090 Hb_002542_090 Hb_006938_010 Hb_006938_010 Hb_002542_090--Hb_006938_010 Hb_005010_040 Hb_005010_040 Hb_002542_090--Hb_005010_040 Hb_002928_220 Hb_002928_220 Hb_002542_090--Hb_002928_220 Hb_001331_040 Hb_001331_040 Hb_002542_090--Hb_001331_040 Hb_000010_200 Hb_000010_200 Hb_002542_090--Hb_000010_200 Hb_001856_060 Hb_001856_060 Hb_002542_090--Hb_001856_060 Hb_006569_110 Hb_006569_110 Hb_006938_010--Hb_006569_110 Hb_006938_010--Hb_001331_040 Hb_000381_030 Hb_000381_030 Hb_006938_010--Hb_000381_030 Hb_007894_260 Hb_007894_260 Hb_006938_010--Hb_007894_260 Hb_006949_030 Hb_006949_030 Hb_006938_010--Hb_006949_030 Hb_005116_010 Hb_005116_010 Hb_005010_040--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_005010_040--Hb_009627_040 Hb_005010_040--Hb_006949_030 Hb_010334_040 Hb_010334_040 Hb_005010_040--Hb_010334_040 Hb_005010_040--Hb_000010_200 Hb_006970_100 Hb_006970_100 Hb_002928_220--Hb_006970_100 Hb_000149_120 Hb_000149_120 Hb_002928_220--Hb_000149_120 Hb_002928_220--Hb_006569_110 Hb_009486_100 Hb_009486_100 Hb_002928_220--Hb_009486_100 Hb_002928_220--Hb_006938_010 Hb_001331_040--Hb_000381_030 Hb_001331_040--Hb_006949_030 Hb_001331_040--Hb_000010_200 Hb_001013_040 Hb_001013_040 Hb_001331_040--Hb_001013_040 Hb_001331_040--Hb_005010_040 Hb_002686_390 Hb_002686_390 Hb_000010_200--Hb_002686_390 Hb_000010_200--Hb_000381_030 Hb_004884_200 Hb_004884_200 Hb_000010_200--Hb_004884_200 Hb_000010_200--Hb_006949_030 Hb_000010_200--Hb_007894_260 Hb_001856_060--Hb_001013_040 Hb_008080_050 Hb_008080_050 Hb_001856_060--Hb_008080_050 Hb_114025_010 Hb_114025_010 Hb_001856_060--Hb_114025_010 Hb_002435_080 Hb_002435_080 Hb_001856_060--Hb_002435_080 Hb_001856_060--Hb_001331_040 Hb_000411_060 Hb_000411_060 Hb_001856_060--Hb_000411_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.155726 3.72109 2.01363 0.475337 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0354375 10.7771 2.13239

CAGE analysis