Hb_002542_110

Information

Type -
Description -
Location Contig2542: 117693-123851
Sequence    

Annotation

kegg
ID tcc:TCM_004570
description hypothetical protein
nr
ID XP_012082707.1
description PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13880 PE=4 SV=1
Gene Ontology
ID GO:0003677
description arginine-glutamic acid dipeptide repeats

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_110 0.0 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
2 Hb_000640_040 0.0510738465 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
3 Hb_010068_080 0.0629749453 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
4 Hb_001716_040 0.0691506482 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
5 Hb_002686_090 0.0738168629 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
6 Hb_002157_080 0.0757720917 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
7 Hb_001488_180 0.0794057113 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
8 Hb_000170_130 0.0822605782 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
9 Hb_001304_110 0.0829041754 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
10 Hb_002830_010 0.0832019757 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
11 Hb_000008_440 0.0842851975 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
12 Hb_005582_040 0.08483354 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
13 Hb_002272_030 0.0874610074 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
14 Hb_001405_070 0.0876364737 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
15 Hb_011671_410 0.0876942443 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
16 Hb_004435_030 0.0885625738 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
17 Hb_066920_030 0.0888046772 - - PREDICTED: adagio protein 1 [Jatropha curcas]
18 Hb_001635_120 0.0889713284 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
19 Hb_062226_070 0.0895565457 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
20 Hb_004916_010 0.0898429804 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]

Gene co-expression network

sample Hb_002542_110 Hb_002542_110 Hb_000640_040 Hb_000640_040 Hb_002542_110--Hb_000640_040 Hb_010068_080 Hb_010068_080 Hb_002542_110--Hb_010068_080 Hb_001716_040 Hb_001716_040 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_000640_040--Hb_001716_040 Hb_005582_040 Hb_005582_040 Hb_000640_040--Hb_005582_040 Hb_001157_240 Hb_001157_240 Hb_000640_040--Hb_001157_240 Hb_000640_040--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_000640_040--Hb_001304_110 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_010068_080--Hb_001304_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_002686_090--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_002686_090--Hb_001716_040 Hb_000170_130 Hb_000170_130 Hb_002686_090--Hb_000170_130 Hb_000015_170 Hb_000015_170 Hb_002157_080--Hb_000015_170 Hb_002157_080--Hb_001488_180 Hb_009658_030 Hb_009658_030 Hb_002157_080--Hb_009658_030 Hb_001473_110 Hb_001473_110 Hb_002157_080--Hb_001473_110 Hb_000347_400 Hb_000347_400 Hb_002157_080--Hb_000347_400 Hb_001488_180--Hb_001473_110 Hb_000028_130 Hb_000028_130 Hb_001488_180--Hb_000028_130 Hb_000479_070 Hb_000479_070 Hb_001488_180--Hb_000479_070 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_000017_220 Hb_000017_220 Hb_001488_180--Hb_000017_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37163 3.43538 2.34107 1.89025 1.11898 1.68337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79824 2.10716 2.84957 2.10877 3.64232

CAGE analysis