Hb_002542_130

Information

Type transcription factor
Description TF Family: HB
Location Contig2542: 132531-141859
Sequence    

Annotation

kegg
ID rcu:RCOM_0555290
description Homeobox protein LUMINIDEPENDENS, putative
nr
ID XP_002520657.1
description Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
swissprot
ID Q38796
description Homeobox protein LUMINIDEPENDENS OS=Arabidopsis thaliana GN=LD PE=1 SV=2
trembl
ID B9S3T8
description Homeobox protein LUMINIDEPENDENS, putative OS=Ricinus communis GN=RCOM_0555290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26576: 132502-137152 , PASA_asmbl_26577: 138287-139618 , PASA_asmbl_26578: 138287-139618 , PASA_asmbl_26579: 139063-139618 , PASA_asmbl_26580: 139718-141797 , PASA_asmbl_26582: 142461-143502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_130 0.0 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
2 Hb_001231_090 0.0532512471 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
3 Hb_001545_150 0.0638628565 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
4 Hb_001277_300 0.0651957637 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
5 Hb_005188_040 0.0658895322 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
6 Hb_004410_070 0.0665164954 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
7 Hb_002282_060 0.067638109 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
8 Hb_000069_130 0.0678738779 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
9 Hb_001089_050 0.0681721795 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
10 Hb_002374_290 0.0682050441 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
11 Hb_001534_210 0.068614711 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
12 Hb_004976_010 0.0689320466 - - hypothetical protein RCOM_1429110 [Ricinus communis]
13 Hb_140049_040 0.0701184286 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
14 Hb_007426_060 0.070569562 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
15 Hb_029977_040 0.0705856651 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
16 Hb_000094_090 0.0713473641 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
17 Hb_012565_050 0.0713749142 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
18 Hb_002085_030 0.0718886999 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
19 Hb_003117_020 0.0733219643 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
20 Hb_004032_230 0.0754242836 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]

Gene co-expression network

sample Hb_002542_130 Hb_002542_130 Hb_001231_090 Hb_001231_090 Hb_002542_130--Hb_001231_090 Hb_001545_150 Hb_001545_150 Hb_002542_130--Hb_001545_150 Hb_001277_300 Hb_001277_300 Hb_002542_130--Hb_001277_300 Hb_005188_040 Hb_005188_040 Hb_002542_130--Hb_005188_040 Hb_004410_070 Hb_004410_070 Hb_002542_130--Hb_004410_070 Hb_002282_060 Hb_002282_060 Hb_002542_130--Hb_002282_060 Hb_001231_090--Hb_002282_060 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_001534_210 Hb_001534_210 Hb_001231_090--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001231_090--Hb_004032_230 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120 Hb_002027_280 Hb_002027_280 Hb_001277_300--Hb_002027_280 Hb_000243_210 Hb_000243_210 Hb_001277_300--Hb_000243_210 Hb_001318_070 Hb_001318_070 Hb_001277_300--Hb_001318_070 Hb_001277_300--Hb_001231_090 Hb_089140_050 Hb_089140_050 Hb_001277_300--Hb_089140_050 Hb_004785_030 Hb_004785_030 Hb_005188_040--Hb_004785_030 Hb_005188_040--Hb_001545_150 Hb_011242_060 Hb_011242_060 Hb_005188_040--Hb_011242_060 Hb_000265_090 Hb_000265_090 Hb_005188_040--Hb_000265_090 Hb_009028_010 Hb_009028_010 Hb_005188_040--Hb_009028_010 Hb_007017_070 Hb_007017_070 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_155159_010 Hb_155159_010 Hb_002282_060--Hb_155159_010 Hb_002073_280 Hb_002073_280 Hb_002282_060--Hb_002073_280 Hb_010661_020 Hb_010661_020 Hb_002282_060--Hb_010661_020 Hb_000703_130 Hb_000703_130 Hb_002282_060--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.61028 20.3178 10.0809 8.59434 10.8911 10.3677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.93976 6.97924 5.53484 7.54639 9.892

CAGE analysis