Hb_002546_020

Information

Type -
Description -
Location Contig2546: 1271-2899
Sequence    

Annotation

kegg
ID mdm:103408823
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
nr
ID XP_008345861.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
swissprot
ID Q8L7G3
description Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1
trembl
ID U5FY67
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s036602g PE=4 SV=1
Gene Ontology
ID GO:0000166
description b-raf proto-oncogene serine threonine-protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002546_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
2 Hb_011512_080 0.1203593095 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
3 Hb_000218_010 0.1252664793 - - -
4 Hb_004324_110 0.1262332414 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
5 Hb_001638_160 0.1340707394 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
6 Hb_008959_020 0.134312941 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
7 Hb_001348_150 0.1343361709 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
8 Hb_006949_020 0.1384234257 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
9 Hb_000175_100 0.1396440028 - - protein kinase, putative [Ricinus communis]
10 Hb_000529_020 0.1405246319 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
11 Hb_004032_270 0.1410537693 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
12 Hb_002745_010 0.1411978249 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
13 Hb_004970_090 0.1414555954 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
14 Hb_000696_090 0.1442097878 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
15 Hb_009838_050 0.1443915842 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001247_120 0.1446239178 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
17 Hb_000218_030 0.1452815576 - - -
18 Hb_112798_020 0.1458060903 - - dnajc14 protein, putative [Ricinus communis]
19 Hb_000563_230 0.1463511458 - - phospholipase d zeta, putative [Ricinus communis]
20 Hb_054865_090 0.1471312713 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002546_020 Hb_002546_020 Hb_011512_080 Hb_011512_080 Hb_002546_020--Hb_011512_080 Hb_000218_010 Hb_000218_010 Hb_002546_020--Hb_000218_010 Hb_004324_110 Hb_004324_110 Hb_002546_020--Hb_004324_110 Hb_001638_160 Hb_001638_160 Hb_002546_020--Hb_001638_160 Hb_008959_020 Hb_008959_020 Hb_002546_020--Hb_008959_020 Hb_001348_150 Hb_001348_150 Hb_002546_020--Hb_001348_150 Hb_004970_090 Hb_004970_090 Hb_011512_080--Hb_004970_090 Hb_112798_020 Hb_112798_020 Hb_011512_080--Hb_112798_020 Hb_002272_020 Hb_002272_020 Hb_011512_080--Hb_002272_020 Hb_000563_230 Hb_000563_230 Hb_011512_080--Hb_000563_230 Hb_005288_170 Hb_005288_170 Hb_011512_080--Hb_005288_170 Hb_000275_170 Hb_000275_170 Hb_011512_080--Hb_000275_170 Hb_033095_020 Hb_033095_020 Hb_000218_010--Hb_033095_020 Hb_000218_010--Hb_001638_160 Hb_002745_010 Hb_002745_010 Hb_000218_010--Hb_002745_010 Hb_000218_010--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_000218_010--Hb_017491_030 Hb_054865_090 Hb_054865_090 Hb_000218_010--Hb_054865_090 Hb_095296_010 Hb_095296_010 Hb_004324_110--Hb_095296_010 Hb_006588_210 Hb_006588_210 Hb_004324_110--Hb_006588_210 Hb_005116_060 Hb_005116_060 Hb_004324_110--Hb_005116_060 Hb_000260_180 Hb_000260_180 Hb_004324_110--Hb_000260_180 Hb_004324_110--Hb_005288_170 Hb_000696_090 Hb_000696_090 Hb_004324_110--Hb_000696_090 Hb_001638_160--Hb_004970_090 Hb_004916_020 Hb_004916_020 Hb_001638_160--Hb_004916_020 Hb_001638_160--Hb_017491_030 Hb_005355_030 Hb_005355_030 Hb_001638_160--Hb_005355_030 Hb_001638_160--Hb_112798_020 Hb_000003_190 Hb_000003_190 Hb_008959_020--Hb_000003_190 Hb_001329_160 Hb_001329_160 Hb_008959_020--Hb_001329_160 Hb_001546_080 Hb_001546_080 Hb_008959_020--Hb_001546_080 Hb_007765_110 Hb_007765_110 Hb_008959_020--Hb_007765_110 Hb_001080_230 Hb_001080_230 Hb_008959_020--Hb_001080_230 Hb_001266_100 Hb_001266_100 Hb_008959_020--Hb_001266_100 Hb_001247_120 Hb_001247_120 Hb_001348_150--Hb_001247_120 Hb_001348_150--Hb_002745_010 Hb_076693_020 Hb_076693_020 Hb_001348_150--Hb_076693_020 Hb_001053_030 Hb_001053_030 Hb_001348_150--Hb_001053_030 Hb_000140_070 Hb_000140_070 Hb_001348_150--Hb_000140_070 Hb_001348_150--Hb_011512_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307672 0.812799 0.185571 0.143629 0.512981 0.267101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.409361 0.643185 0.181226 0.223031 0.19995

CAGE analysis