Hb_002546_040

Information

Type -
Description -
Location Contig2546: 19755-20111
Sequence    

Annotation

kegg
ID mdm:103412871
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1
nr
ID KDO75651.1
description hypothetical protein CISIN_1g005599mg [Citrus sinensis]
swissprot
ID P0DH87
description Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=PSEUDOSRKA PE=5 SV=1
trembl
ID A0A067GK13
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005599mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002546_040 0.0 - - hypothetical protein CISIN_1g005599mg [Citrus sinensis]
2 Hb_004361_010 0.2369467205 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
3 Hb_010874_030 0.2461972099 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
4 Hb_000733_270 0.2560858876 - - PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
5 Hb_009848_020 0.2589452842 - - hypothetical protein VITISV_026702 [Vitis vinifera]
6 Hb_000787_190 0.2688280924 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
7 Hb_029977_050 0.2725743224 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
8 Hb_006913_050 0.2840051097 - - -
9 Hb_059641_010 0.2843695075 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_084470_010 0.2879358618 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_012404_040 0.2896812604 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
12 Hb_097347_010 0.2947074555 - - PREDICTED: molybdenum cofactor sulfurase-like, partial [Malus domestica]
13 Hb_000069_090 0.2982392667 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_007785_010 0.2988202091 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_141212_010 0.2992405143 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_000610_020 0.299525808 - - unknown [Glycine max]
17 Hb_000928_150 0.3008489849 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003311_050 0.3023161528 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
19 Hb_009848_040 0.3046113343 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
20 Hb_001950_040 0.3051453653 - - -

Gene co-expression network

sample Hb_002546_040 Hb_002546_040 Hb_004361_010 Hb_004361_010 Hb_002546_040--Hb_004361_010 Hb_010874_030 Hb_010874_030 Hb_002546_040--Hb_010874_030 Hb_000733_270 Hb_000733_270 Hb_002546_040--Hb_000733_270 Hb_009848_020 Hb_009848_020 Hb_002546_040--Hb_009848_020 Hb_000787_190 Hb_000787_190 Hb_002546_040--Hb_000787_190 Hb_029977_050 Hb_029977_050 Hb_002546_040--Hb_029977_050 Hb_111985_010 Hb_111985_010 Hb_004361_010--Hb_111985_010 Hb_004361_010--Hb_000733_270 Hb_004361_010--Hb_009848_020 Hb_084470_010 Hb_084470_010 Hb_004361_010--Hb_084470_010 Hb_000679_200 Hb_000679_200 Hb_004361_010--Hb_000679_200 Hb_003311_050 Hb_003311_050 Hb_010874_030--Hb_003311_050 Hb_009780_090 Hb_009780_090 Hb_010874_030--Hb_009780_090 Hb_000928_150 Hb_000928_150 Hb_010874_030--Hb_000928_150 Hb_094101_010 Hb_094101_010 Hb_010874_030--Hb_094101_010 Hb_003647_010 Hb_003647_010 Hb_010874_030--Hb_003647_010 Hb_004724_120 Hb_004724_120 Hb_000733_270--Hb_004724_120 Hb_000733_270--Hb_084470_010 Hb_002235_140 Hb_002235_140 Hb_000733_270--Hb_002235_140 Hb_000021_100 Hb_000021_100 Hb_000733_270--Hb_000021_100 Hb_007785_010 Hb_007785_010 Hb_000733_270--Hb_007785_010 Hb_003073_170 Hb_003073_170 Hb_000733_270--Hb_003073_170 Hb_009848_020--Hb_084470_010 Hb_003854_020 Hb_003854_020 Hb_009848_020--Hb_003854_020 Hb_059641_010 Hb_059641_010 Hb_009848_020--Hb_059641_010 Hb_000123_030 Hb_000123_030 Hb_009848_020--Hb_000123_030 Hb_144550_020 Hb_144550_020 Hb_009848_020--Hb_144550_020 Hb_000330_160 Hb_000330_160 Hb_009848_020--Hb_000330_160 Hb_000022_180 Hb_000022_180 Hb_000787_190--Hb_000022_180 Hb_005203_020 Hb_005203_020 Hb_000787_190--Hb_005203_020 Hb_004108_170 Hb_004108_170 Hb_000787_190--Hb_004108_170 Hb_000123_330 Hb_000123_330 Hb_000787_190--Hb_000123_330 Hb_000787_190--Hb_029977_050 Hb_003155_020 Hb_003155_020 Hb_000787_190--Hb_003155_020 Hb_001278_040 Hb_001278_040 Hb_029977_050--Hb_001278_040 Hb_001544_080 Hb_001544_080 Hb_029977_050--Hb_001544_080 Hb_080451_010 Hb_080451_010 Hb_029977_050--Hb_080451_010 Hb_000120_970 Hb_000120_970 Hb_029977_050--Hb_000120_970 Hb_003371_230 Hb_003371_230 Hb_029977_050--Hb_003371_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.266681 2.90053 0 1.36996 0.810714 2.59831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.478211 0 1.12138 0

CAGE analysis