Hb_002548_030

Information

Type -
Description -
Location Contig2548: 39576-43152
Sequence    

Annotation

kegg
ID pmum:103343650
description uncharacterized LOC103343650
nr
ID XP_008245518.1
description PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5X5B2
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb016160mg PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002548_030 0.0 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
2 Hb_000359_230 0.0024119791 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
3 Hb_110356_010 0.0149415331 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
4 Hb_099188_010 0.0453943077 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_034581_010 0.0480196713 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
6 Hb_001677_140 0.0580660987 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
7 Hb_128851_020 0.0691415079 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_157957_010 0.0774407419 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
9 Hb_036754_040 0.0813143683 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_003207_230 0.0819444865 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
11 Hb_047955_010 0.0859957245 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
12 Hb_010477_020 0.0882174328 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
13 Hb_010136_020 0.0882399822 - - stress-induced receptor-like kinase [Medicago truncatula]
14 Hb_002252_030 0.0906460978 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
15 Hb_002006_110 0.0912883234 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
16 Hb_124953_010 0.0928644129 - - hypothetical protein RCOM_1314600 [Ricinus communis]
17 Hb_001511_200 0.100266679 - - Embryonic abundant protein, putative [Ricinus communis]
18 Hb_000032_150 0.1037920133 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
19 Hb_002542_030 0.113194536 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
20 Hb_008637_020 0.1241491991 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002548_030 Hb_002548_030 Hb_000359_230 Hb_000359_230 Hb_002548_030--Hb_000359_230 Hb_110356_010 Hb_110356_010 Hb_002548_030--Hb_110356_010 Hb_099188_010 Hb_099188_010 Hb_002548_030--Hb_099188_010 Hb_034581_010 Hb_034581_010 Hb_002548_030--Hb_034581_010 Hb_001677_140 Hb_001677_140 Hb_002548_030--Hb_001677_140 Hb_128851_020 Hb_128851_020 Hb_002548_030--Hb_128851_020 Hb_000359_230--Hb_110356_010 Hb_000359_230--Hb_099188_010 Hb_000359_230--Hb_034581_010 Hb_000359_230--Hb_001677_140 Hb_000359_230--Hb_128851_020 Hb_110356_010--Hb_034581_010 Hb_110356_010--Hb_001677_140 Hb_110356_010--Hb_099188_010 Hb_110356_010--Hb_128851_020 Hb_099188_010--Hb_128851_020 Hb_099188_010--Hb_001677_140 Hb_099188_010--Hb_034581_010 Hb_034581_010--Hb_001677_140 Hb_036754_040 Hb_036754_040 Hb_034581_010--Hb_036754_040 Hb_010136_020 Hb_010136_020 Hb_034581_010--Hb_010136_020 Hb_001677_140--Hb_128851_020 Hb_001677_140--Hb_010136_020 Hb_002006_110 Hb_002006_110 Hb_001677_140--Hb_002006_110 Hb_001677_140--Hb_036754_040 Hb_001511_200 Hb_001511_200 Hb_128851_020--Hb_001511_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.182093 0.0855121 0.047527 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis