Hb_002551_020

Information

Type -
Description -
Location Contig2551: 13950-31874
Sequence    

Annotation

kegg
ID rcu:RCOM_0742540
description hypothetical protein
nr
ID XP_012077089.1
description PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
swissprot
ID Q8W5R2
description Phospholipase SGR2 OS=Arabidopsis thaliana GN=SGR2 PE=1 SV=1
trembl
ID A0A067LMH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17221 PE=4 SV=1
Gene Ontology
ID GO:0009506
description shoot gravitropism 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26609: 22803-26410 , PASA_asmbl_26610: 30757-31155 , PASA_asmbl_26611: 31485-31798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002551_020 0.0 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
2 Hb_011671_220 0.0927959389 - - conserved hypothetical protein [Ricinus communis]
3 Hb_168773_010 0.1032603853 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_004109_190 0.1050878055 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
5 Hb_000029_020 0.1079071519 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_002496_050 0.1099889519 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
7 Hb_000061_320 0.1127452374 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
8 Hb_000483_200 0.1144172267 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_148209_110 0.1147654397 - - putative polyol transported protein 2 [Hevea brasiliensis]
10 Hb_020000_010 0.1159748878 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
11 Hb_001959_210 0.1184256501 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
12 Hb_000115_060 0.1196046845 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
13 Hb_003732_010 0.119792562 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
14 Hb_005701_010 0.1198142468 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
15 Hb_024185_020 0.1209446815 - - -
16 Hb_183086_060 0.1213197254 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
17 Hb_000236_070 0.121473111 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000563_550 0.122089618 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
19 Hb_007508_070 0.1222325423 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
20 Hb_006915_050 0.1223047996 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002551_020 Hb_002551_020 Hb_011671_220 Hb_011671_220 Hb_002551_020--Hb_011671_220 Hb_168773_010 Hb_168773_010 Hb_002551_020--Hb_168773_010 Hb_004109_190 Hb_004109_190 Hb_002551_020--Hb_004109_190 Hb_000029_020 Hb_000029_020 Hb_002551_020--Hb_000029_020 Hb_002496_050 Hb_002496_050 Hb_002551_020--Hb_002496_050 Hb_000061_320 Hb_000061_320 Hb_002551_020--Hb_000061_320 Hb_005117_010 Hb_005117_010 Hb_011671_220--Hb_005117_010 Hb_020000_010 Hb_020000_010 Hb_011671_220--Hb_020000_010 Hb_000230_540 Hb_000230_540 Hb_011671_220--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_011671_220--Hb_004055_140 Hb_010436_060 Hb_010436_060 Hb_011671_220--Hb_010436_060 Hb_000865_060 Hb_000865_060 Hb_168773_010--Hb_000865_060 Hb_168773_010--Hb_010436_060 Hb_168773_010--Hb_005117_010 Hb_168773_010--Hb_011671_220 Hb_001623_510 Hb_001623_510 Hb_168773_010--Hb_001623_510 Hb_183086_060 Hb_183086_060 Hb_004109_190--Hb_183086_060 Hb_002687_110 Hb_002687_110 Hb_004109_190--Hb_002687_110 Hb_004724_420 Hb_004724_420 Hb_004109_190--Hb_004724_420 Hb_006541_030 Hb_006541_030 Hb_004109_190--Hb_006541_030 Hb_004976_030 Hb_004976_030 Hb_004109_190--Hb_004976_030 Hb_000567_260 Hb_000567_260 Hb_004109_190--Hb_000567_260 Hb_001811_020 Hb_001811_020 Hb_000029_020--Hb_001811_020 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_000029_020--Hb_002687_110 Hb_000115_330 Hb_000115_330 Hb_000029_020--Hb_000115_330 Hb_000029_020--Hb_004109_190 Hb_006915_050 Hb_006915_050 Hb_002496_050--Hb_006915_050 Hb_007672_050 Hb_007672_050 Hb_002496_050--Hb_007672_050 Hb_000236_070 Hb_000236_070 Hb_002496_050--Hb_000236_070 Hb_002253_070 Hb_002253_070 Hb_002496_050--Hb_002253_070 Hb_001017_040 Hb_001017_040 Hb_002496_050--Hb_001017_040 Hb_164926_030 Hb_164926_030 Hb_002496_050--Hb_164926_030 Hb_012338_010 Hb_012338_010 Hb_000061_320--Hb_012338_010 Hb_009954_040 Hb_009954_040 Hb_000061_320--Hb_009954_040 Hb_003175_040 Hb_003175_040 Hb_000061_320--Hb_003175_040 Hb_000300_610 Hb_000300_610 Hb_000061_320--Hb_000300_610 Hb_003020_230 Hb_003020_230 Hb_000061_320--Hb_003020_230 Hb_026527_030 Hb_026527_030 Hb_000061_320--Hb_026527_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66474 1.67724 1.65431 2.16428 7.72515 11.5259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9772 6.66672 13.1381 5.85275 5.78597

CAGE analysis