Hb_002551_070

Information

Type -
Description -
Location Contig2551: 113366-119916
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10130g
description POPTRDRAFT_665672; hypothetical protein
nr
ID XP_002325509.2
description hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
swissprot
ID Q99PF5
description Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1
trembl
ID B9IQ96
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s10130g PE=4 SV=2
Gene Ontology
ID GO:0003723
description far upstream element-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26612: 113641-120015 , PASA_asmbl_26613: 113444-120015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002551_070 0.0 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
2 Hb_003623_030 0.0663637555 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
3 Hb_032631_040 0.0700726546 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
4 Hb_002974_060 0.0743958578 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
5 Hb_003966_030 0.0744751589 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
6 Hb_000183_020 0.0748925382 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
7 Hb_048476_180 0.0763864979 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
8 Hb_007805_010 0.0765129249 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
9 Hb_004096_100 0.0776632726 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
10 Hb_116929_010 0.078439128 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
11 Hb_003362_070 0.0797671917 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
12 Hb_003656_180 0.0817818065 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
13 Hb_000785_040 0.0828035846 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
14 Hb_003044_020 0.0883296699 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
15 Hb_003428_070 0.0884141893 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
16 Hb_011716_020 0.0889661688 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
17 Hb_003544_100 0.0890751288 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
18 Hb_002493_020 0.0897391712 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
19 Hb_117552_010 0.0901460838 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_016898_010 0.0902365155 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]

Gene co-expression network

sample Hb_002551_070 Hb_002551_070 Hb_003623_030 Hb_003623_030 Hb_002551_070--Hb_003623_030 Hb_032631_040 Hb_032631_040 Hb_002551_070--Hb_032631_040 Hb_002974_060 Hb_002974_060 Hb_002551_070--Hb_002974_060 Hb_003966_030 Hb_003966_030 Hb_002551_070--Hb_003966_030 Hb_000183_020 Hb_000183_020 Hb_002551_070--Hb_000183_020 Hb_048476_180 Hb_048476_180 Hb_002551_070--Hb_048476_180 Hb_002028_170 Hb_002028_170 Hb_003623_030--Hb_002028_170 Hb_000107_040 Hb_000107_040 Hb_003623_030--Hb_000107_040 Hb_000158_100 Hb_000158_100 Hb_003623_030--Hb_000158_100 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_003623_030--Hb_032631_040 Hb_117552_010 Hb_117552_010 Hb_032631_040--Hb_117552_010 Hb_009476_040 Hb_009476_040 Hb_032631_040--Hb_009476_040 Hb_032631_040--Hb_002974_060 Hb_005701_070 Hb_005701_070 Hb_032631_040--Hb_005701_070 Hb_011716_020 Hb_011716_020 Hb_002974_060--Hb_011716_020 Hb_002600_140 Hb_002600_140 Hb_002974_060--Hb_002600_140 Hb_001496_070 Hb_001496_070 Hb_002974_060--Hb_001496_070 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_002974_060--Hb_116929_010 Hb_003362_070 Hb_003362_070 Hb_003966_030--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_003966_030--Hb_004102_140 Hb_001617_060 Hb_001617_060 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_003044_020 Hb_003044_020 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_002329_040 Hb_002329_040 Hb_000183_020--Hb_002329_040 Hb_000183_020--Hb_003044_020 Hb_001195_320 Hb_001195_320 Hb_000183_020--Hb_001195_320 Hb_000183_020--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000183_020--Hb_000166_130 Hb_000922_370 Hb_000922_370 Hb_000183_020--Hb_000922_370 Hb_048476_180--Hb_003362_070 Hb_007307_020 Hb_007307_020 Hb_048476_180--Hb_007307_020 Hb_016898_010 Hb_016898_010 Hb_048476_180--Hb_016898_010 Hb_009411_010 Hb_009411_010 Hb_048476_180--Hb_009411_010 Hb_000101_240 Hb_000101_240 Hb_048476_180--Hb_000101_240 Hb_004935_030 Hb_004935_030 Hb_048476_180--Hb_004935_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7175 28.5372 14.8705 15.7052 36.3014 66.244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.482 14.7284 20.7748 32.0065 32.8917

CAGE analysis