Hb_002551_090

Information

Type -
Description -
Location Contig2551: 161657-170659
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10160g
description POPTRDRAFT_1108286; hypothetical protein
nr
ID KDP45617.1
description hypothetical protein JCGZ_17224 [Jatropha curcas]
swissprot
ID Q69ZF3
description Non-lysosomal glucosylceramidase OS=Mus musculus GN=Gba2 PE=1 SV=2
trembl
ID A0A067LB36
description Non-lysosomal glucosylceramidase OS=Jatropha curcas GN=JCGZ_17224 PE=3 SV=1
Gene Ontology
ID GO:0016021
description non-lysosomal glucosylceramidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26617: 165624-165954 , PASA_asmbl_26618: 167107-169931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002551_090 0.0 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
2 Hb_012807_060 0.0835836094 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_001158_080 0.08928981 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
4 Hb_000934_290 0.1020868898 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008140_060 0.1048475469 - - Cytochrome P450, putative [Theobroma cacao]
6 Hb_003052_120 0.1112833205 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
7 Hb_022501_020 0.1123752771 - - AMP dependent CoA ligase, putative [Ricinus communis]
8 Hb_182021_010 0.1133608371 - - sucrose transporter 4 [Hevea brasiliensis]
9 Hb_009581_050 0.1157993819 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
10 Hb_003788_010 0.1160197451 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
11 Hb_003807_020 0.1231965206 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
12 Hb_000844_100 0.1245711596 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
13 Hb_003453_030 0.1247299396 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
14 Hb_000579_180 0.1250162926 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
15 Hb_000335_050 0.1266007715 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
16 Hb_002750_010 0.1269968618 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
17 Hb_088916_010 0.1274770467 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
18 Hb_055305_010 0.1281844388 - - Disease resistance protein RFL1, putative [Ricinus communis]
19 Hb_117168_010 0.1284340078 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_094637_010 0.1312702149 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]

Gene co-expression network

sample Hb_002551_090 Hb_002551_090 Hb_012807_060 Hb_012807_060 Hb_002551_090--Hb_012807_060 Hb_001158_080 Hb_001158_080 Hb_002551_090--Hb_001158_080 Hb_000934_290 Hb_000934_290 Hb_002551_090--Hb_000934_290 Hb_008140_060 Hb_008140_060 Hb_002551_090--Hb_008140_060 Hb_003052_120 Hb_003052_120 Hb_002551_090--Hb_003052_120 Hb_022501_020 Hb_022501_020 Hb_002551_090--Hb_022501_020 Hb_009581_050 Hb_009581_050 Hb_012807_060--Hb_009581_050 Hb_012807_060--Hb_003052_120 Hb_000579_180 Hb_000579_180 Hb_012807_060--Hb_000579_180 Hb_003430_020 Hb_003430_020 Hb_012807_060--Hb_003430_020 Hb_008226_120 Hb_008226_120 Hb_012807_060--Hb_008226_120 Hb_001158_080--Hb_000934_290 Hb_184942_010 Hb_184942_010 Hb_001158_080--Hb_184942_010 Hb_001158_080--Hb_008140_060 Hb_009642_010 Hb_009642_010 Hb_001158_080--Hb_009642_010 Hb_003787_060 Hb_003787_060 Hb_001158_080--Hb_003787_060 Hb_000934_290--Hb_008140_060 Hb_003788_010 Hb_003788_010 Hb_000934_290--Hb_003788_010 Hb_039496_010 Hb_039496_010 Hb_000934_290--Hb_039496_010 Hb_000934_290--Hb_003787_060 Hb_094637_010 Hb_094637_010 Hb_000934_290--Hb_094637_010 Hb_008140_060--Hb_094637_010 Hb_000844_100 Hb_000844_100 Hb_008140_060--Hb_000844_100 Hb_088916_010 Hb_088916_010 Hb_008140_060--Hb_088916_010 Hb_013914_020 Hb_013914_020 Hb_003052_120--Hb_013914_020 Hb_000586_100 Hb_000586_100 Hb_003052_120--Hb_000586_100 Hb_003052_120--Hb_009581_050 Hb_000407_080 Hb_000407_080 Hb_003052_120--Hb_000407_080 Hb_006241_010 Hb_006241_010 Hb_022501_020--Hb_006241_010 Hb_022501_020--Hb_012807_060 Hb_003453_030 Hb_003453_030 Hb_022501_020--Hb_003453_030 Hb_004044_030 Hb_004044_030 Hb_022501_020--Hb_004044_030 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.262542 8.1533 1.24215 5.75569 0.100583 0.162319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0298205 0.105599 0.201913 14.2751 2.07682

CAGE analysis