Hb_002552_020

Information

Type -
Description -
Location Contig2552: 33471-37335
Sequence    

Annotation

kegg
ID rcu:RCOM_0510040
description 116 kD U5 small nuclear ribonucleoprotein component, putative
nr
ID XP_012081110.1
description PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
swissprot
ID O08810
description 116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1
trembl
ID A0A067KEB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16966 PE=4 SV=1
Gene Ontology
ID GO:0030529
description 116 kda u5 small nuclear ribonucleoprotein component-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26620: 35263-35765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002552_020 0.0 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
2 Hb_001925_070 0.1423958433 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
3 Hb_007044_100 0.1757941602 - - hypothetical protein POPTR_0004s10420g [Populus trichocarpa]
4 Hb_005917_030 0.2192116694 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000203_210 0.219410375 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
6 Hb_002078_270 0.2260822783 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
7 Hb_000808_260 0.2260850586 - - hypothetical protein RCOM_1434920 [Ricinus communis]
8 Hb_002010_050 0.2282593428 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007317_130 0.2409609481 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
10 Hb_000254_110 0.241417469 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
11 Hb_003910_050 0.2442547636 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
12 Hb_000453_280 0.2442671845 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
13 Hb_005695_080 0.2478502934 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
14 Hb_001629_010 0.2488179548 - - Disease resistance protein RPM1, putative [Theobroma cacao]
15 Hb_006717_080 0.2494257469 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_119327_010 0.2498601185 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
17 Hb_000406_190 0.2499083722 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_002783_150 0.2513578339 - - cyclophilin [Hevea brasiliensis]
19 Hb_007218_160 0.2514005577 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
20 Hb_001230_030 0.2524721313 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002552_020 Hb_002552_020 Hb_001925_070 Hb_001925_070 Hb_002552_020--Hb_001925_070 Hb_007044_100 Hb_007044_100 Hb_002552_020--Hb_007044_100 Hb_005917_030 Hb_005917_030 Hb_002552_020--Hb_005917_030 Hb_000203_210 Hb_000203_210 Hb_002552_020--Hb_000203_210 Hb_002078_270 Hb_002078_270 Hb_002552_020--Hb_002078_270 Hb_000808_260 Hb_000808_260 Hb_002552_020--Hb_000808_260 Hb_000254_110 Hb_000254_110 Hb_001925_070--Hb_000254_110 Hb_001925_070--Hb_000808_260 Hb_012539_040 Hb_012539_040 Hb_001925_070--Hb_012539_040 Hb_004648_030 Hb_004648_030 Hb_001925_070--Hb_004648_030 Hb_001925_070--Hb_005917_030 Hb_003910_050 Hb_003910_050 Hb_007044_100--Hb_003910_050 Hb_007044_100--Hb_005917_030 Hb_005695_080 Hb_005695_080 Hb_007044_100--Hb_005695_080 Hb_002235_100 Hb_002235_100 Hb_007044_100--Hb_002235_100 Hb_004502_010 Hb_004502_010 Hb_007044_100--Hb_004502_010 Hb_005917_030--Hb_002078_270 Hb_000997_140 Hb_000997_140 Hb_005917_030--Hb_000997_140 Hb_001832_040 Hb_001832_040 Hb_005917_030--Hb_001832_040 Hb_018043_020 Hb_018043_020 Hb_005917_030--Hb_018043_020 Hb_001890_010 Hb_001890_010 Hb_005917_030--Hb_001890_010 Hb_007576_150 Hb_007576_150 Hb_005917_030--Hb_007576_150 Hb_067664_010 Hb_067664_010 Hb_000203_210--Hb_067664_010 Hb_008494_090 Hb_008494_090 Hb_000203_210--Hb_008494_090 Hb_119327_010 Hb_119327_010 Hb_000203_210--Hb_119327_010 Hb_000522_010 Hb_000522_010 Hb_000203_210--Hb_000522_010 Hb_000032_600 Hb_000032_600 Hb_000203_210--Hb_000032_600 Hb_000386_050 Hb_000386_050 Hb_000203_210--Hb_000386_050 Hb_000920_130 Hb_000920_130 Hb_002078_270--Hb_000920_130 Hb_002078_270--Hb_005695_080 Hb_007317_130 Hb_007317_130 Hb_002078_270--Hb_007317_130 Hb_001054_070 Hb_001054_070 Hb_002078_270--Hb_001054_070 Hb_000406_190 Hb_000406_190 Hb_002078_270--Hb_000406_190 Hb_004976_080 Hb_004976_080 Hb_000808_260--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000808_260--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_000808_260--Hb_000594_150 Hb_004907_070 Hb_004907_070 Hb_000808_260--Hb_004907_070 Hb_000072_240 Hb_000072_240 Hb_000808_260--Hb_000072_240 Hb_003126_010 Hb_003126_010 Hb_000808_260--Hb_003126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0359476 0.494377 0.319624 0.0630031 0 0.0329228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219166 0.201145 0 0.275835 0.776707

CAGE analysis