Hb_002553_010

Information

Type -
Description -
Location Contig2553: 6511-11000
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08380g
description POPTRDRAFT_884206; hypothetical protein
nr
ID XP_011030519.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
swissprot
ID Q8H1S4
description 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1
trembl
ID B9HUA4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s08380g PE=3 SV=2
Gene Ontology
ID GO:0016706
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26638: 6649-8032 , PASA_asmbl_26640: 9604-10173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_010 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
2 Hb_004800_130 0.088168594 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
3 Hb_002259_110 0.0897775696 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
4 Hb_152910_010 0.0915230776 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
5 Hb_001205_180 0.0915594921 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
6 Hb_001488_210 0.094341563 - - PREDICTED: protein RIK [Jatropha curcas]
7 Hb_000856_300 0.1006943541 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
8 Hb_001373_160 0.1040951639 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
9 Hb_000300_250 0.1044661636 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
10 Hb_010775_010 0.1060220208 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
11 Hb_012940_040 0.1076777351 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
12 Hb_000866_080 0.1084707218 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
13 Hb_033554_020 0.1108537935 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
14 Hb_003849_220 0.1110696415 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
15 Hb_001221_090 0.1118282015 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
16 Hb_001133_090 0.1120088591 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
17 Hb_000803_180 0.1124426658 - - hexokinase [Manihot esculenta]
18 Hb_009178_010 0.113298562 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
19 Hb_148682_010 0.114121698 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
20 Hb_000302_170 0.1144330745 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_002553_010 Hb_002553_010 Hb_004800_130 Hb_004800_130 Hb_002553_010--Hb_004800_130 Hb_002259_110 Hb_002259_110 Hb_002553_010--Hb_002259_110 Hb_152910_010 Hb_152910_010 Hb_002553_010--Hb_152910_010 Hb_001205_180 Hb_001205_180 Hb_002553_010--Hb_001205_180 Hb_001488_210 Hb_001488_210 Hb_002553_010--Hb_001488_210 Hb_000856_300 Hb_000856_300 Hb_002553_010--Hb_000856_300 Hb_004800_130--Hb_001205_180 Hb_001133_090 Hb_001133_090 Hb_004800_130--Hb_001133_090 Hb_010775_010 Hb_010775_010 Hb_004800_130--Hb_010775_010 Hb_006794_020 Hb_006794_020 Hb_004800_130--Hb_006794_020 Hb_159295_010 Hb_159295_010 Hb_004800_130--Hb_159295_010 Hb_002259_110--Hb_152910_010 Hb_002259_110--Hb_001133_090 Hb_075203_010 Hb_075203_010 Hb_002259_110--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_002259_110--Hb_000134_250 Hb_001373_160 Hb_001373_160 Hb_002259_110--Hb_001373_160 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_030545_030 Hb_030545_030 Hb_152910_010--Hb_030545_030 Hb_004319_050 Hb_004319_050 Hb_152910_010--Hb_004319_050 Hb_000302_170 Hb_000302_170 Hb_152910_010--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_152910_010--Hb_000300_550 Hb_000640_190 Hb_000640_190 Hb_152910_010--Hb_000640_190 Hb_001205_180--Hb_001133_090 Hb_001205_180--Hb_010775_010 Hb_001205_180--Hb_001488_210 Hb_083078_010 Hb_083078_010 Hb_001205_180--Hb_083078_010 Hb_001488_210--Hb_010775_010 Hb_000300_250 Hb_000300_250 Hb_001488_210--Hb_000300_250 Hb_002686_410 Hb_002686_410 Hb_001488_210--Hb_002686_410 Hb_003216_060 Hb_003216_060 Hb_001488_210--Hb_003216_060 Hb_000453_230 Hb_000453_230 Hb_001488_210--Hb_000453_230 Hb_008948_140 Hb_008948_140 Hb_000856_300--Hb_008948_140 Hb_000926_150 Hb_000926_150 Hb_000856_300--Hb_000926_150 Hb_000580_050 Hb_000580_050 Hb_000856_300--Hb_000580_050 Hb_001008_100 Hb_001008_100 Hb_000856_300--Hb_001008_100 Hb_000373_170 Hb_000373_170 Hb_000856_300--Hb_000373_170 Hb_000787_200 Hb_000787_200 Hb_000856_300--Hb_000787_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08565 3.37802 2.97934 1.81365 1.82981 0.942392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.581024 0.516186 0.224663 2.33186 1.47153

CAGE analysis