Hb_002553_020

Information

Type -
Description -
Location Contig2553: 12600-15358
Sequence    

Annotation

kegg
ID rcu:RCOM_0491750
description hypothetical protein
nr
ID XP_002529297.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L7R5
description CASP-like protein 5B3 OS=Arabidopsis thaliana GN=At3g23200 PE=2 SV=1
trembl
ID B9STH8
description CASP-like protein OS=Ricinus communis GN=RCOM_0491750 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5b3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26641: 12539-12703 , PASA_asmbl_26642: 12890-15449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_159558_030 0.0730667267 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
3 Hb_000155_190 0.0853991935 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003728_020 0.0933523214 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010128_130 0.0958582726 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
6 Hb_004884_220 0.0976471049 - - hypothetical protein 29 [Hevea brasiliensis]
7 Hb_000500_130 0.0976664382 - - small GTPase [Hevea brasiliensis]
8 Hb_011537_010 0.0977073107 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
9 Hb_004195_160 0.0988981165 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
10 Hb_003551_020 0.0993205428 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
11 Hb_007547_010 0.0995889575 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
12 Hb_021068_050 0.1000069888 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
13 Hb_005527_050 0.1002675958 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
14 Hb_000392_270 0.1013388858 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
15 Hb_168918_020 0.1014680963 - - pectin acetylesterase, putative [Ricinus communis]
16 Hb_024835_030 0.1017226898 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
17 Hb_001776_110 0.1018955628 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
18 Hb_031089_010 0.1020053897 - - DNA binding protein, putative [Ricinus communis]
19 Hb_001439_120 0.1022613364 - - conserved hypothetical protein [Ricinus communis]
20 Hb_118419_020 0.1024593697 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]

Gene co-expression network

sample Hb_002553_020 Hb_002553_020 Hb_159558_030 Hb_159558_030 Hb_002553_020--Hb_159558_030 Hb_000155_190 Hb_000155_190 Hb_002553_020--Hb_000155_190 Hb_003728_020 Hb_003728_020 Hb_002553_020--Hb_003728_020 Hb_010128_130 Hb_010128_130 Hb_002553_020--Hb_010128_130 Hb_004884_220 Hb_004884_220 Hb_002553_020--Hb_004884_220 Hb_000500_130 Hb_000500_130 Hb_002553_020--Hb_000500_130 Hb_159558_030--Hb_000500_130 Hb_002400_220 Hb_002400_220 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_006569_020 Hb_006569_020 Hb_159558_030--Hb_006569_020 Hb_158092_070 Hb_158092_070 Hb_159558_030--Hb_158092_070 Hb_004195_160 Hb_004195_160 Hb_000155_190--Hb_004195_160 Hb_002375_020 Hb_002375_020 Hb_000155_190--Hb_002375_020 Hb_010863_080 Hb_010863_080 Hb_000155_190--Hb_010863_080 Hb_000224_170 Hb_000224_170 Hb_000155_190--Hb_000224_170 Hb_002027_260 Hb_002027_260 Hb_000155_190--Hb_002027_260 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_001741_140 Hb_001741_140 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_004738_080 Hb_004738_080 Hb_004884_220--Hb_004738_080 Hb_002477_240 Hb_002477_240 Hb_004884_220--Hb_002477_240 Hb_000329_690 Hb_000329_690 Hb_004884_220--Hb_000329_690 Hb_005535_050 Hb_005535_050 Hb_004884_220--Hb_005535_050 Hb_000977_080 Hb_000977_080 Hb_004884_220--Hb_000977_080 Hb_000417_180 Hb_000417_180 Hb_004884_220--Hb_000417_180 Hb_000200_210 Hb_000200_210 Hb_000500_130--Hb_000200_210 Hb_000500_130--Hb_002400_220 Hb_004324_310 Hb_004324_310 Hb_000500_130--Hb_004324_310 Hb_125000_010 Hb_125000_010 Hb_000500_130--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_000500_130--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1043 3.18794 1.40495 3.83612 11.3522 8.20393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.98606 10.4982 6.32098 2.52998 2.03381

CAGE analysis