Hb_002553_030

Information

Type -
Description -
Location Contig2553: 18669-20290
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16550g
description hypothetical protein
nr
ID XP_006379888.1
description hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
swissprot
ID Q9FL41
description WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1
trembl
ID U5G2P9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16550g PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at5g07050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_030 0.0 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
2 Hb_000208_220 0.0946860689 - - -
3 Hb_001508_010 0.1049019497 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000373_140 0.1145808766 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
5 Hb_003414_020 0.115633458 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
6 Hb_184798_060 0.1186228079 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001761_160 0.1204953277 - - hypothetical protein VITISV_019364 [Vitis vinifera]
8 Hb_027638_010 0.1281869909 - - Protein KES1, putative [Ricinus communis]
9 Hb_079902_010 0.1304729039 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
10 Hb_004643_010 0.1484349325 - - cytochrome B, putative [Ricinus communis]
11 Hb_161881_010 0.1486008201 - - laccase, putative [Ricinus communis]
12 Hb_004052_130 0.150043498 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
13 Hb_004375_020 0.1502155063 - - hypothetical protein VITISV_034560 [Vitis vinifera]
14 Hb_001300_090 0.1506707966 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
15 Hb_004208_040 0.1549976976 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
16 Hb_002551_030 0.1551928603 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
17 Hb_000123_070 0.1552387393 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_006663_080 0.1562179663 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
19 Hb_003625_030 0.1563339843 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
20 Hb_004683_030 0.1563825058 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]

Gene co-expression network

sample Hb_002553_030 Hb_002553_030 Hb_000208_220 Hb_000208_220 Hb_002553_030--Hb_000208_220 Hb_001508_010 Hb_001508_010 Hb_002553_030--Hb_001508_010 Hb_000373_140 Hb_000373_140 Hb_002553_030--Hb_000373_140 Hb_003414_020 Hb_003414_020 Hb_002553_030--Hb_003414_020 Hb_184798_060 Hb_184798_060 Hb_002553_030--Hb_184798_060 Hb_001761_160 Hb_001761_160 Hb_002553_030--Hb_001761_160 Hb_001300_090 Hb_001300_090 Hb_000208_220--Hb_001300_090 Hb_161881_010 Hb_161881_010 Hb_000208_220--Hb_161881_010 Hb_000208_220--Hb_184798_060 Hb_000208_220--Hb_001761_160 Hb_001081_050 Hb_001081_050 Hb_000208_220--Hb_001081_050 Hb_079902_010 Hb_079902_010 Hb_001508_010--Hb_079902_010 Hb_001508_010--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_001508_010--Hb_101462_010 Hb_002551_030 Hb_002551_030 Hb_001508_010--Hb_002551_030 Hb_077242_020 Hb_077242_020 Hb_001508_010--Hb_077242_020 Hb_000373_140--Hb_101462_010 Hb_004208_040 Hb_004208_040 Hb_000373_140--Hb_004208_040 Hb_000373_140--Hb_079902_010 Hb_004987_040 Hb_004987_040 Hb_000373_140--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_000373_140--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_000373_140--Hb_000123_070 Hb_003414_020--Hb_001761_160 Hb_000108_030 Hb_000108_030 Hb_003414_020--Hb_000108_030 Hb_002260_210 Hb_002260_210 Hb_003414_020--Hb_002260_210 Hb_000710_110 Hb_000710_110 Hb_003414_020--Hb_000710_110 Hb_006221_020 Hb_006221_020 Hb_003414_020--Hb_006221_020 Hb_184798_060--Hb_001761_160 Hb_184798_060--Hb_001081_050 Hb_184798_060--Hb_003414_020 Hb_003144_010 Hb_003144_010 Hb_184798_060--Hb_003144_010 Hb_004924_040 Hb_004924_040 Hb_001761_160--Hb_004924_040 Hb_003058_160 Hb_003058_160 Hb_001761_160--Hb_003058_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0194927 0.279413 0.10694 0.0150374 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0140652 2.81661

CAGE analysis