Hb_002553_060

Information

Type -
Description -
Location Contig2553: 24398-26999
Sequence    

Annotation

kegg
ID rcu:RCOM_0491720
description electron transfer flavoprotein beta-subunit, putative
nr
ID XP_012069807.1
description PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
swissprot
ID Q9LSW8
description Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1
trembl
ID A0A067L8A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02312 PE=4 SV=1
Gene Ontology
ID GO:0009055
description electron transfer flavoprotein subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26644: 24446-26840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_060 0.0 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
2 Hb_001946_400 0.0602665147 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
3 Hb_001021_150 0.0636151972 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
4 Hb_001318_280 0.064519814 - - Protein FAM18B, putative [Ricinus communis]
5 Hb_008616_050 0.0663271151 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
6 Hb_000976_120 0.0686335956 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
7 Hb_189216_020 0.0690487909 - - PREDICTED: translin [Jatropha curcas]
8 Hb_001472_100 0.0709288312 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
9 Hb_008847_030 0.0712845302 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
10 Hb_000676_120 0.0718534233 - - -
11 Hb_000905_110 0.0722337181 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
12 Hb_004330_090 0.0725233858 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
13 Hb_000441_200 0.0736017133 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_002641_060 0.0742604852 - - prefoldin subunit, putative [Ricinus communis]
15 Hb_001232_190 0.0750016647 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
16 Hb_000075_040 0.078730702 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
17 Hb_009898_050 0.0788686425 - - PREDICTED: beta-taxilin [Jatropha curcas]
18 Hb_000579_120 0.0792315503 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
19 Hb_000081_160 0.0806703687 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
20 Hb_014834_150 0.0807317595 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002553_060 Hb_002553_060 Hb_001946_400 Hb_001946_400 Hb_002553_060--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_002553_060--Hb_001021_150 Hb_001318_280 Hb_001318_280 Hb_002553_060--Hb_001318_280 Hb_008616_050 Hb_008616_050 Hb_002553_060--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_002553_060--Hb_000976_120 Hb_189216_020 Hb_189216_020 Hb_002553_060--Hb_189216_020 Hb_001946_400--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_008847_030 Hb_008847_030 Hb_001946_400--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_001946_400--Hb_007416_340 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_001021_150--Hb_008847_030 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_172632_100 Hb_172632_100 Hb_001318_280--Hb_172632_100 Hb_003994_230 Hb_003994_230 Hb_001318_280--Hb_003994_230 Hb_001318_280--Hb_008616_050 Hb_000081_160 Hb_000081_160 Hb_001318_280--Hb_000081_160 Hb_002641_060 Hb_002641_060 Hb_001318_280--Hb_002641_060 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_008616_050--Hb_002641_060 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_008616_050--Hb_008847_030 Hb_001472_100 Hb_001472_100 Hb_000976_120--Hb_001472_100 Hb_003878_090 Hb_003878_090 Hb_000976_120--Hb_003878_090 Hb_003647_140 Hb_003647_140 Hb_000976_120--Hb_003647_140 Hb_000976_120--Hb_002641_060 Hb_000976_120--Hb_014834_150 Hb_000579_120 Hb_000579_120 Hb_000976_120--Hb_000579_120 Hb_000948_160 Hb_000948_160 Hb_189216_020--Hb_000948_160 Hb_001470_030 Hb_001470_030 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_002994_030 Hb_002994_030 Hb_189216_020--Hb_002994_030 Hb_189216_020--Hb_001946_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1703 8.1418 15.764 17.7451 16.7058 12.9756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5781 22.3902 10.2682 14.568 18.2828

CAGE analysis