Hb_002553_100

Information

Type transcription factor
Description TF Family: ERF
Location Contig2553: 100825-101286
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018601mg
description hypothetical protein
nr
ID XP_010093427.1
description Ethylene-responsive transcription factor [Morus notabilis]
swissprot
ID Q9LTC5
description Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=1 SV=1
trembl
ID W9R427
description Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_012825 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf098-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_100 0.0 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
2 Hb_000220_170 0.1070222589 - - -
3 Hb_001789_010 0.1192970666 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
4 Hb_111985_120 0.1337667384 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
5 Hb_111693_010 0.1451631841 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
6 Hb_001006_200 0.1462802705 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
7 Hb_174514_010 0.1548989339 - - flavin-containing monooxygenase family protein [Populus trichocarpa]
8 Hb_089843_010 0.1575865992 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
9 Hb_003086_180 0.176403471 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
10 Hb_004703_010 0.1764433692 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
11 Hb_005653_100 0.1777878662 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
12 Hb_007645_110 0.1810584605 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
13 Hb_004055_080 0.1813927012 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_001609_080 0.1819442433 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
15 Hb_002003_030 0.1826892087 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
16 Hb_009778_050 0.1854902016 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
17 Hb_002027_310 0.1890838094 - - conserved hypothetical protein [Ricinus communis]
18 Hb_111985_160 0.1893533477 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
19 Hb_023774_010 0.1912926159 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
20 Hb_000613_270 0.1917366692 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_002553_100 Hb_002553_100 Hb_000220_170 Hb_000220_170 Hb_002553_100--Hb_000220_170 Hb_001789_010 Hb_001789_010 Hb_002553_100--Hb_001789_010 Hb_111985_120 Hb_111985_120 Hb_002553_100--Hb_111985_120 Hb_111693_010 Hb_111693_010 Hb_002553_100--Hb_111693_010 Hb_001006_200 Hb_001006_200 Hb_002553_100--Hb_001006_200 Hb_174514_010 Hb_174514_010 Hb_002553_100--Hb_174514_010 Hb_000220_170--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_000220_170--Hb_004055_080 Hb_000220_170--Hb_001789_010 Hb_000220_170--Hb_111985_120 Hb_058526_010 Hb_058526_010 Hb_000220_170--Hb_058526_010 Hb_001789_010--Hb_111985_120 Hb_001789_010--Hb_111693_010 Hb_001377_480 Hb_001377_480 Hb_001789_010--Hb_001377_480 Hb_187211_010 Hb_187211_010 Hb_001789_010--Hb_187211_010 Hb_111985_120--Hb_001377_480 Hb_111985_120--Hb_111693_010 Hb_111985_160 Hb_111985_160 Hb_111985_120--Hb_111985_160 Hb_001101_020 Hb_001101_020 Hb_111985_120--Hb_001101_020 Hb_111693_010--Hb_004055_080 Hb_111693_010--Hb_058526_010 Hb_005653_100 Hb_005653_100 Hb_111693_010--Hb_005653_100 Hb_000029_420 Hb_000029_420 Hb_111693_010--Hb_000029_420 Hb_003086_180 Hb_003086_180 Hb_001006_200--Hb_003086_180 Hb_001652_050 Hb_001652_050 Hb_001006_200--Hb_001652_050 Hb_023774_010 Hb_023774_010 Hb_001006_200--Hb_023774_010 Hb_000613_270 Hb_000613_270 Hb_001006_200--Hb_000613_270 Hb_089843_010 Hb_089843_010 Hb_001006_200--Hb_089843_010 Hb_047923_010 Hb_047923_010 Hb_001006_200--Hb_047923_010 Hb_174514_010--Hb_089843_010 Hb_174514_010--Hb_003086_180 Hb_174514_010--Hb_023774_010 Hb_174514_010--Hb_000613_270 Hb_174514_010--Hb_047923_010 Hb_174514_010--Hb_001652_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.328798 0.634396 0.0941646 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.959193 0

CAGE analysis