Hb_002553_120

Information

Type transcription factor
Description TF Family: ERF
Location Contig2553: 126682-127341
Sequence    

Annotation

kegg
ID rcu:RCOM_1007740
description Ethylene-responsive transcription factor 1B, putative
nr
ID XP_012069811.1
description PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
swissprot
ID Q8LDC8
description Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2
trembl
ID A0A067KZD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02316 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_120 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
2 Hb_006446_060 0.0807458864 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
3 Hb_161393_010 0.0811333207 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005653_020 0.0817187913 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_000684_020 0.0962066039 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_002081_040 0.0991686101 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
7 Hb_001621_140 0.0994297232 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
8 Hb_041769_010 0.1028898573 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_000101_050 0.1058526496 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
10 Hb_003086_200 0.1066164791 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
11 Hb_002007_230 0.1069035244 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
12 Hb_001693_020 0.111849341 - - zinc finger protein, putative [Ricinus communis]
13 Hb_002671_110 0.1208106142 - - PREDICTED: remorin-like [Jatropha curcas]
14 Hb_059162_010 0.1217064448 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000237_150 0.1232973483 - - Epoxide hydrolase 2 [Morus notabilis]
16 Hb_005797_030 0.125940684 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
17 Hb_047163_010 0.1281134577 - - PREDICTED: periaxin-like [Populus euphratica]
18 Hb_005228_170 0.1286732009 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_001838_050 0.129239393 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
20 Hb_019229_020 0.1326178472 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002553_120 Hb_002553_120 Hb_006446_060 Hb_006446_060 Hb_002553_120--Hb_006446_060 Hb_161393_010 Hb_161393_010 Hb_002553_120--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_002553_120--Hb_005653_020 Hb_000684_020 Hb_000684_020 Hb_002553_120--Hb_000684_020 Hb_002081_040 Hb_002081_040 Hb_002553_120--Hb_002081_040 Hb_001621_140 Hb_001621_140 Hb_002553_120--Hb_001621_140 Hb_000101_050 Hb_000101_050 Hb_006446_060--Hb_000101_050 Hb_041769_010 Hb_041769_010 Hb_006446_060--Hb_041769_010 Hb_006446_060--Hb_001621_140 Hb_005993_070 Hb_005993_070 Hb_006446_060--Hb_005993_070 Hb_006446_060--Hb_161393_010 Hb_006446_060--Hb_005653_020 Hb_161393_010--Hb_002081_040 Hb_161393_010--Hb_001621_140 Hb_161393_010--Hb_041769_010 Hb_161393_010--Hb_005653_020 Hb_005653_020--Hb_001621_140 Hb_005653_020--Hb_002081_040 Hb_005653_020--Hb_041769_010 Hb_110218_010 Hb_110218_010 Hb_000684_020--Hb_110218_010 Hb_004200_040 Hb_004200_040 Hb_000684_020--Hb_004200_040 Hb_009012_020 Hb_009012_020 Hb_000684_020--Hb_009012_020 Hb_004463_040 Hb_004463_040 Hb_000684_020--Hb_004463_040 Hb_003900_050 Hb_003900_050 Hb_000684_020--Hb_003900_050 Hb_005228_170 Hb_005228_170 Hb_002081_040--Hb_005228_170 Hb_002081_040--Hb_001621_140 Hb_005218_070 Hb_005218_070 Hb_002081_040--Hb_005218_070 Hb_000951_030 Hb_000951_030 Hb_002081_040--Hb_000951_030 Hb_001621_140--Hb_041769_010 Hb_003074_070 Hb_003074_070 Hb_001621_140--Hb_003074_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.64696 0.0863927 0.333671 0.0381997 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.00268 0.135605

CAGE analysis