Hb_002553_160

Information

Type -
Description -
Location Contig2553: 171937-174627
Sequence    

Annotation

kegg
ID bvg:104907573
description uncharacterized LOC104907573
nr
ID XP_010248013.1
description PREDICTED: uncharacterized protein LOC104590935 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_160 0.0 - - PREDICTED: uncharacterized protein LOC104590935 [Nelumbo nucifera]
2 Hb_001373_020 0.1433498027 - - -
3 Hb_141142_010 0.2008679528 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
4 Hb_011861_110 0.2294007635 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
5 Hb_001584_010 0.2335147176 - - kelch repeat protein, putative [Ricinus communis]
6 Hb_004976_060 0.2354187127 - - -
7 Hb_003175_020 0.2394326256 - - homeobox protein knotted-1, putative [Ricinus communis]
8 Hb_000097_040 0.2410565884 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
9 Hb_133636_010 0.2424553974 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
10 Hb_007773_030 0.2442860844 - - -
11 Hb_000021_120 0.2456674302 - - PREDICTED: uncharacterized protein LOC104115996 isoform X1 [Nicotiana tomentosiformis]
12 Hb_003525_020 0.2554924562 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000977_010 0.2574904023 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_000610_020 0.258030645 - - unknown [Glycine max]
15 Hb_025194_010 0.2604955464 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
16 Hb_005186_090 0.2609288872 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002903_130 0.26212867 - - epoxide hydrolase, putative [Ricinus communis]
18 Hb_048848_010 0.2631931989 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
19 Hb_007253_040 0.2647081462 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
20 Hb_003299_010 0.264854955 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002553_160 Hb_002553_160 Hb_001373_020 Hb_001373_020 Hb_002553_160--Hb_001373_020 Hb_141142_010 Hb_141142_010 Hb_002553_160--Hb_141142_010 Hb_011861_110 Hb_011861_110 Hb_002553_160--Hb_011861_110 Hb_001584_010 Hb_001584_010 Hb_002553_160--Hb_001584_010 Hb_004976_060 Hb_004976_060 Hb_002553_160--Hb_004976_060 Hb_003175_020 Hb_003175_020 Hb_002553_160--Hb_003175_020 Hb_001373_020--Hb_011861_110 Hb_007773_030 Hb_007773_030 Hb_001373_020--Hb_007773_030 Hb_006615_040 Hb_006615_040 Hb_001373_020--Hb_006615_040 Hb_001373_020--Hb_001584_010 Hb_007137_030 Hb_007137_030 Hb_001373_020--Hb_007137_030 Hb_000844_010 Hb_000844_010 Hb_141142_010--Hb_000844_010 Hb_003384_070 Hb_003384_070 Hb_141142_010--Hb_003384_070 Hb_141142_010--Hb_003175_020 Hb_025194_010 Hb_025194_010 Hb_141142_010--Hb_025194_010 Hb_133636_010 Hb_133636_010 Hb_141142_010--Hb_133636_010 Hb_005157_010 Hb_005157_010 Hb_141142_010--Hb_005157_010 Hb_002461_080 Hb_002461_080 Hb_011861_110--Hb_002461_080 Hb_010921_090 Hb_010921_090 Hb_011861_110--Hb_010921_090 Hb_011861_110--Hb_133636_010 Hb_000088_160 Hb_000088_160 Hb_011861_110--Hb_000088_160 Hb_011861_110--Hb_007773_030 Hb_002783_320 Hb_002783_320 Hb_011861_110--Hb_002783_320 Hb_000189_120 Hb_000189_120 Hb_001584_010--Hb_000189_120 Hb_008175_030 Hb_008175_030 Hb_001584_010--Hb_008175_030 Hb_003299_010 Hb_003299_010 Hb_001584_010--Hb_003299_010 Hb_000778_020 Hb_000778_020 Hb_001584_010--Hb_000778_020 Hb_000007_160 Hb_000007_160 Hb_001584_010--Hb_000007_160 Hb_003525_020 Hb_003525_020 Hb_001584_010--Hb_003525_020 Hb_000538_190 Hb_000538_190 Hb_004976_060--Hb_000538_190 Hb_004976_060--Hb_003525_020 Hb_020178_060 Hb_020178_060 Hb_004976_060--Hb_020178_060 Hb_004976_040 Hb_004976_040 Hb_004976_060--Hb_004976_040 Hb_002903_130 Hb_002903_130 Hb_004976_060--Hb_002903_130 Hb_048848_010 Hb_048848_010 Hb_004976_060--Hb_048848_010 Hb_003175_020--Hb_025194_010 Hb_124302_030 Hb_124302_030 Hb_003175_020--Hb_124302_030 Hb_003175_020--Hb_133636_010 Hb_007144_010 Hb_007144_010 Hb_003175_020--Hb_007144_010 Hb_101089_010 Hb_101089_010 Hb_003175_020--Hb_101089_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0403016 0.00670607 0.00639698 0.00905455 0.00861625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0257005 0

CAGE analysis