Hb_002553_170

Information

Type -
Description -
Location Contig2553: 185217-186035
Sequence    

Annotation

kegg
ID tcc:TCM_020877
description hypothetical protein
nr
ID XP_012069943.1
description PREDICTED: early nodulin-75-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02321 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_170 0.0 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
2 Hb_001930_060 0.0399688843 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
3 Hb_002835_020 0.0416604456 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
4 Hb_003334_080 0.0453497137 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_000563_060 0.051424179 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
6 Hb_003188_020 0.054331849 - - chitinase, putative [Ricinus communis]
7 Hb_000141_070 0.0544195407 - - l-lactate dehydrogenase, putative [Ricinus communis]
8 Hb_001301_020 0.0551374805 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
9 Hb_009568_010 0.0555284119 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
10 Hb_001456_040 0.0570051273 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
11 Hb_000500_190 0.0574929136 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
12 Hb_000446_100 0.0576449932 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_166232_010 0.0594123294 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
14 Hb_039363_010 0.0606680821 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_153208_010 0.0609163389 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
16 Hb_000563_080 0.0609972245 - - -
17 Hb_001140_330 0.063647475 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
18 Hb_109163_010 0.0639900966 - - polyphenol oxidase [Hevea brasiliensis]
19 Hb_000388_160 0.0640921643 - - xyloglucan endo-1 family protein [Populus trichocarpa]
20 Hb_004254_070 0.0662144269 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]

Gene co-expression network

sample Hb_002553_170 Hb_002553_170 Hb_001930_060 Hb_001930_060 Hb_002553_170--Hb_001930_060 Hb_002835_020 Hb_002835_020 Hb_002553_170--Hb_002835_020 Hb_003334_080 Hb_003334_080 Hb_002553_170--Hb_003334_080 Hb_000563_060 Hb_000563_060 Hb_002553_170--Hb_000563_060 Hb_003188_020 Hb_003188_020 Hb_002553_170--Hb_003188_020 Hb_000141_070 Hb_000141_070 Hb_002553_170--Hb_000141_070 Hb_166232_010 Hb_166232_010 Hb_001930_060--Hb_166232_010 Hb_001930_060--Hb_002835_020 Hb_001930_060--Hb_003334_080 Hb_001301_020 Hb_001301_020 Hb_001930_060--Hb_001301_020 Hb_009568_010 Hb_009568_010 Hb_001930_060--Hb_009568_010 Hb_039363_010 Hb_039363_010 Hb_002835_020--Hb_039363_010 Hb_002835_020--Hb_000563_060 Hb_000388_160 Hb_000388_160 Hb_002835_020--Hb_000388_160 Hb_002835_020--Hb_003334_080 Hb_003334_080--Hb_000141_070 Hb_058620_040 Hb_058620_040 Hb_003334_080--Hb_058620_040 Hb_003334_080--Hb_009568_010 Hb_058620_050 Hb_058620_050 Hb_003334_080--Hb_058620_050 Hb_004190_030 Hb_004190_030 Hb_000563_060--Hb_004190_030 Hb_001140_330 Hb_001140_330 Hb_000563_060--Hb_001140_330 Hb_000563_060--Hb_039363_010 Hb_003119_110 Hb_003119_110 Hb_000563_060--Hb_003119_110 Hb_153208_010 Hb_153208_010 Hb_000563_060--Hb_153208_010 Hb_003188_020--Hb_001301_020 Hb_000563_080 Hb_000563_080 Hb_003188_020--Hb_000563_080 Hb_014034_020 Hb_014034_020 Hb_003188_020--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_003188_020--Hb_004254_070 Hb_000446_100 Hb_000446_100 Hb_003188_020--Hb_000446_100 Hb_003188_020--Hb_153208_010 Hb_000141_070--Hb_058620_050 Hb_000141_070--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_000141_070--Hb_007483_040 Hb_000141_070--Hb_058620_040 Hb_001456_040 Hb_001456_040 Hb_000141_070--Hb_001456_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.99708 1.18295 1.88624 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0514448 0.279766 125.524 0.103507

CAGE analysis