Hb_002559_040

Information

Type transcription factor
Description TF Family: TUB
Location Contig2559: 26592-29910
Sequence    

Annotation

kegg
ID rcu:RCOM_1594760
description phosphoric diester hydrolase, putative
nr
ID XP_012071879.1
description PREDICTED: tubby-like F-box protein 5 isoform X2 [Jatropha curcas]
swissprot
ID Q6Z2G9
description Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1
trembl
ID B9R7W3
description Tubby-like F-box protein OS=Ricinus communis GN=RCOM_1594760 PE=3 SV=1
Gene Ontology
ID GO:0003700
description tubby-like f-box protein 5 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26669: 26604-29647 , PASA_asmbl_26670: 28810-28947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002559_040 0.0 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 5 isoform X2 [Jatropha curcas]
2 Hb_002750_050 0.1202247846 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
3 Hb_000566_100 0.1204222921 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
4 Hb_000172_540 0.1233580265 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
5 Hb_013726_080 0.1247076013 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
6 Hb_000392_370 0.1271809242 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
7 Hb_002249_120 0.132555831 - - RNA-binding protein, putative [Ricinus communis]
8 Hb_002942_060 0.1326374498 - - RNA-binding protein, putative [Ricinus communis]
9 Hb_003430_090 0.1333512757 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000072_090 0.1335481679 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
11 Hb_000983_160 0.1338244366 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
12 Hb_003376_050 0.1410985353 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
13 Hb_001604_120 0.1426761411 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
14 Hb_000797_050 0.1434177254 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
15 Hb_002681_170 0.143997456 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
16 Hb_000700_150 0.1444702362 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002769_020 0.1458651798 - - DNA-damage-inducible protein f, putative [Ricinus communis]
18 Hb_000208_260 0.1482174308 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
19 Hb_001638_290 0.148384607 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
20 Hb_029904_020 0.151179149 - - hypothetical protein JCGZ_06227 [Jatropha curcas]

Gene co-expression network

sample Hb_002559_040 Hb_002559_040 Hb_002750_050 Hb_002750_050 Hb_002559_040--Hb_002750_050 Hb_000566_100 Hb_000566_100 Hb_002559_040--Hb_000566_100 Hb_000172_540 Hb_000172_540 Hb_002559_040--Hb_000172_540 Hb_013726_080 Hb_013726_080 Hb_002559_040--Hb_013726_080 Hb_000392_370 Hb_000392_370 Hb_002559_040--Hb_000392_370 Hb_002249_120 Hb_002249_120 Hb_002559_040--Hb_002249_120 Hb_003430_090 Hb_003430_090 Hb_002750_050--Hb_003430_090 Hb_002750_050--Hb_000392_370 Hb_041290_010 Hb_041290_010 Hb_002750_050--Hb_041290_010 Hb_000207_190 Hb_000207_190 Hb_002750_050--Hb_000207_190 Hb_002750_050--Hb_013726_080 Hb_000915_110 Hb_000915_110 Hb_002750_050--Hb_000915_110 Hb_000566_100--Hb_002249_120 Hb_018954_020 Hb_018954_020 Hb_000566_100--Hb_018954_020 Hb_002681_170 Hb_002681_170 Hb_000566_100--Hb_002681_170 Hb_001050_010 Hb_001050_010 Hb_000566_100--Hb_001050_010 Hb_008556_030 Hb_008556_030 Hb_000566_100--Hb_008556_030 Hb_029904_020 Hb_029904_020 Hb_000172_540--Hb_029904_020 Hb_001021_220 Hb_001021_220 Hb_000172_540--Hb_001021_220 Hb_003104_040 Hb_003104_040 Hb_000172_540--Hb_003104_040 Hb_029866_100 Hb_029866_100 Hb_000172_540--Hb_029866_100 Hb_000983_160 Hb_000983_160 Hb_000172_540--Hb_000983_160 Hb_003398_100 Hb_003398_100 Hb_000172_540--Hb_003398_100 Hb_002539_110 Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_001486_170 Hb_001486_170 Hb_013726_080--Hb_001486_170 Hb_000915_080 Hb_000915_080 Hb_013726_080--Hb_000915_080 Hb_005463_130 Hb_005463_130 Hb_013726_080--Hb_005463_130 Hb_002054_050 Hb_002054_050 Hb_013726_080--Hb_002054_050 Hb_013726_080--Hb_003430_090 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_001584_370 Hb_001584_370 Hb_000392_370--Hb_001584_370 Hb_000392_370--Hb_003430_090 Hb_001396_280 Hb_001396_280 Hb_000392_370--Hb_001396_280 Hb_002249_120--Hb_002681_170 Hb_002307_350 Hb_002307_350 Hb_002249_120--Hb_002307_350 Hb_017895_020 Hb_017895_020 Hb_002249_120--Hb_017895_020 Hb_003436_050 Hb_003436_050 Hb_002249_120--Hb_003436_050 Hb_005408_020 Hb_005408_020 Hb_002249_120--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_002249_120--Hb_001900_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7613 6.5104 28.7307 24.8164 34.983 33.8909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3744 2.64658 18.0034 11.9295 26.4266

CAGE analysis